Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   U471_RS07935 Genome accession   NC_022653
Coordinates   1593223..1594122 (+) Length   299 a.a.
NCBI ID   WP_012117549.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens CC178     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1588223..1599122
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U471_RS07915 (U471_16300) - 1588914..1590617 (+) 1704 WP_012117548.1 hypothetical protein -
  U471_RS07920 (U471_16310) - 1590614..1590895 (+) 282 WP_007409769.1 FlhB-like flagellar biosynthesis protein -
  U471_RS07925 (U471_16320) sucC 1591070..1592227 (+) 1158 WP_003154283.1 ADP-forming succinate--CoA ligase subunit beta -
  U471_RS07930 (U471_16330) sucD 1592256..1593158 (+) 903 WP_003154281.1 succinate--CoA ligase subunit alpha -
  U471_RS07935 (U471_16340) dprA 1593223..1594122 (+) 900 WP_012117549.1 DNA-processing protein DprA Machinery gene
  U471_RS07940 (U471_16360) topA 1594304..1596379 (+) 2076 WP_007409771.1 type I DNA topoisomerase -
  U471_RS07945 (U471_16370) trmFO 1596444..1597751 (+) 1308 WP_012117550.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  U471_RS07950 (U471_16380) xerC 1597821..1598738 (+) 918 WP_007409774.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 299 a.a.        Molecular weight: 32834.02 Da        Isoelectric Point: 7.7903

>NTDB_id=63162 U471_RS07935 WP_012117549.1 1593223..1594122(+) (dprA) [Bacillus amyloliquefaciens CC178]
MDQASRCLMVCSINQIISPSLLLKWWKADHSLSFLPHPHPLTVLSEGKTAPEAIFREIERKDPELDEVLSDYRREGITVI
PISSSCYPTWLKAIYDPPAVLYAKGNTLLLEKGRKIGIVGTRKPTEDGIKAVGHLSAELSKKGWVIVSGLASGIDGLSHK
ASIRAKGLTIGVIAGGFHHIYPRENLLLAEYMAEHHLLLSEHPPETKPKKWHFPMRNRIISGLSEGIVVVQGKEKSGSLI
TAYQALDQGREVFAVPGSIFNPYSGGPIKLIQEGAKAVLCAEDIDGELTARCVQYTEPF

Nucleotide


Download         Length: 900 bp        

>NTDB_id=63162 U471_RS07935 WP_012117549.1 1593223..1594122(+) (dprA) [Bacillus amyloliquefaciens CC178]
TTGGATCAAGCATCGCGCTGTTTAATGGTCTGCAGTATTAATCAAATCATTTCCCCGTCTCTTCTATTAAAATGGTGGAA
AGCTGATCATTCTCTGTCTTTTTTACCGCATCCGCATCCATTAACTGTTTTATCAGAAGGGAAAACAGCCCCGGAAGCAA
TTTTTCGGGAAATAGAGCGCAAGGATCCGGAACTTGATGAAGTTCTGTCCGATTACCGCCGCGAAGGCATTACTGTCATT
CCGATTTCATCAAGCTGCTATCCAACATGGCTTAAAGCGATTTATGATCCGCCGGCTGTCCTGTATGCAAAAGGGAACAC
GCTGCTTCTTGAAAAAGGCAGAAAAATCGGGATTGTAGGAACGCGGAAACCGACGGAAGACGGAATAAAAGCGGTTGGGC
ATCTTTCCGCCGAACTCTCAAAAAAAGGCTGGGTCATTGTAAGCGGGCTTGCATCCGGTATAGACGGATTGTCTCATAAG
GCGAGCATCAGGGCAAAAGGGCTTACGATCGGCGTGATAGCCGGCGGATTCCATCACATCTATCCCCGGGAAAATCTCCT
GTTAGCAGAATACATGGCTGAACACCATCTCCTACTCTCAGAACATCCTCCTGAAACAAAGCCGAAAAAATGGCACTTTC
CGATGAGAAACCGCATAATCAGCGGACTAAGTGAAGGAATTGTGGTCGTGCAGGGAAAAGAAAAAAGCGGTTCATTAATC
ACAGCTTACCAGGCTCTCGATCAAGGCAGAGAGGTATTTGCCGTTCCGGGTTCCATATTTAATCCATATTCCGGAGGACC
TATAAAACTCATTCAAGAAGGGGCGAAAGCTGTATTATGCGCAGAGGATATTGACGGAGAGCTGACCGCCCGATGCGTTC
AGTATACGGAACCCTTTTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(73-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

70.903

100

0.709
  dprA Lactococcus lactis subsp. cremoris KW2

41.667

88.294

0.368

Multiple sequence alignment