Detailed information NTG0631606

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: N5861_RS00290
• Genome accession: NZ_CP104598
• Coordinates: 48507..49532 (-)
• Length: 341 a.a.
• NCBI ID: WP_000644904.1
• Uniprot ID: P0ACN8
• Organism: Escherichia coli strain AHM8C160RI
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 43507..54532

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
N5861_RS00260 (N5861_00260)	zapB	43591..43836 (+)	246	WP_001296623.1	septal ring assembly protein ZapB	-
N5861_RS00265 (N5861_00265)	rraA	43921..44406 (-)	486	WP_000872908.1	ribonuclease E activity regulator RraA	-
N5861_RS00270 (N5861_00270)	menA	44499..45425 (-)	927	WP_001308187.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
N5861_RS00275 (N5861_00275)	hslU	45492..46823 (-)	1332	WP_001293341.1	HslU--HslV peptidase ATPase subunit	-
N5861_RS00280 (N5861_00280)	hslV	46833..47363 (-)	531	WP_000208242.1	ATP-dependent protease subunit HslV	-
N5861_RS00285 (N5861_00285)	ftsN	47456..48415 (-)	960	WP_000068837.1	cell division protein FtsN	-
N5861_RS00290 (N5861_00290)	cytR	48507..49532 (-)	1026	WP_000644904.1	DNA-binding transcriptional regulator CytR	Regulator
N5861_RS00295 (N5861_00295)	priA	49688..51886 (-)	2199	WP_094317839.1	primosomal protein N'	Machinery gene
N5861_RS00300 (N5861_00300)	rpmE	52089..52301 (+)	213	WP_000710769.1	50S ribosomal protein L31	-
N5861_RS00305 (N5861_00305)	yiiX	52362..52970 (-)	609	WP_000797341.1	YiiX family permuted papain-like enzyme	-
N5861_RS00310 (N5861_00310)	metJ	53154..53471 (-)	318	WP_000852812.1	met regulon transcriptional regulator MetJ	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 37819.78 Da
• Isoelectric Point: 6.3842

>NTDB_id=631606 N5861_RS00290 WP_000644904.1 48507..49532(-) (cytR) [Escherichia coli strain AHM8C160RI]
MKAKKQETAATMKDVALKAKVSTATVSRALMNPDKVSQATRNRVEKAAREVGYLPQPMGRNVKRNESRTILVIVPDICDP
FFSEIIRGIEVTAANHGYLVLIGDCAHQNQQEKTFIDLIITKQIDGMLLLGSRLPFDASIEEQRNLPPMVMANEFAPELE
LPTVHIDNLTAAFDAVNYLYEQGHKRIGCIAGPEEMPLCHYRLQGYVQALRRCGIMVDPQYIARGDFTFEAGSKAMQQLL
DLPQPPTAVFCHSDVMALGALSQAKRQGLKVPEDLSIIGFDNIDLTQFCDPPLTTIAQPRYEIGREAMLLLLDQMQGQHV
GSGSRLMDCELIIRGSTRALP

Nucleotide

• Length: 1026 bp

>NTDB_id=631606 N5861_RS00290 WP_000644904.1 48507..49532(-) (cytR) [Escherichia coli strain AHM8C160RI]
GTGAAAGCGAAGAAGCAGGAAACTGCCGCGACCATGAAAGACGTTGCCCTCAAGGCAAAAGTCTCTACAGCGACCGTCTC
CCGAGCATTAATGAATCCCGATAAAGTCTCTCAGGCCACCCGTAATCGGGTTGAAAAAGCGGCCCGGGAAGTGGGTTATT
TACCGCAGCCTATGGGGCGCAACGTCAAGCGTAATGAATCCCGCACCATTCTGGTGATTGTCCCGGATATCTGCGATCCC
TTCTTTAGCGAAATTATTCGCGGTATAGAAGTTACGGCGGCAAATCACGGATATCTGGTGCTGATTGGCGACTGTGCGCA
TCAAAATCAGCAGGAAAAAACCTTTATCGATTTGATCATCACCAAGCAAATTGATGGCATGTTGCTGCTGGGTTCAAGGC
TGCCGTTTGATGCCAGCATTGAGGAACAGCGTAATCTGCCGCCGATGGTGATGGCGAACGAATTTGCACCGGAACTGGAG
CTGCCTACCGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATTTATATGAGCAAGGGCATAAACGGAT
TGGCTGTATAGCCGGTCCCGAAGAGATGCCGCTGTGTCACTACCGCCTGCAAGGTTACGTTCAGGCGCTGCGTCGCTGCG
GCATTATGGTTGATCCGCAATACATCGCCCGTGGTGACTTCACCTTCGAAGCCGGAAGCAAAGCGATGCAGCAGCTGCTT
GATCTTCCACAACCGCCTACTGCTGTCTTCTGCCATAGCGATGTGATGGCGCTCGGCGCACTTTCTCAGGCAAAACGCCA
GGGGCTGAAAGTCCCGGAAGACCTTTCCATAATCGGTTTTGATAACATCGACCTGACGCAATTTTGTGATCCGCCGCTGA
CAACCATCGCGCAGCCGCGTTACGAAATCGGTCGGGAAGCTATGCTGTTATTGCTTGATCAAATGCAGGGGCAACACGTT
GGCAGTGGCTCTCGTTTAATGGACTGCGAACTTATCATCCGGGGATCAACACGCGCGTTACCTTAA

Domains

Predicted by InterProScan.

• Bacterial regulatory proteins, lacI family (LacI) (11-56)

• Periplasmic binding protein-like domain (Peripla_BP_3) (176-337)

3D structure

• AlphaFold DB: P0ACN8

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	64.179	98.24	0.63
cytR	Vibrio cholerae C6706	65.443	95.894	0.628