Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   U471_RS06965 Genome accession   NC_022653
Coordinates   1356253..1356849 (+) Length   198 a.a.
NCBI ID   WP_012117447.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens CC178     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1351253..1361849
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U471_RS06935 (U471_14230) - 1351465..1351920 (+) 456 WP_012117442.1 flavodoxin -
  U471_RS06940 (U471_14240) dapD 1352002..1352712 (+) 711 WP_012117443.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  U471_RS06945 (U471_14250) - 1352783..1353907 (+) 1125 WP_012117444.1 N-acetyldiaminopimelate deacetylase -
  U471_RS06950 (U471_14260) - 1353968..1354213 (+) 246 WP_003154596.1 YkuS family protein -
  U471_RS06955 (U471_14270) - 1354247..1355053 (-) 807 WP_012117445.1 mechanosensitive ion channel family protein -
  U471_RS06960 (U471_14280) - 1355342..1355800 (+) 459 WP_012117446.1 TlpA disulfide reductase family protein -
  U471_RS06965 (U471_14290) rok 1356253..1356849 (+) 597 WP_012117447.1 transcriptional regulator Rok Regulator
  U471_RS06970 (U471_14300) - 1356870..1357862 (-) 993 WP_012117448.1 hypothetical protein -
  U471_RS06975 (U471_14310) - 1358008..1358610 (+) 603 WP_012117449.1 molybdenum cofactor guanylyltransferase -
  U471_RS06980 (U471_14320) - 1358662..1359681 (+) 1020 WP_007611113.1 molybdopterin-synthase adenylyltransferase MoeB -
  U471_RS06985 (U471_14330) glp 1359699..1360991 (+) 1293 WP_012117450.1 gephyrin-like molybdotransferase Glp -
  U471_RS06990 (U471_14340) mobB 1360952..1361473 (+) 522 WP_007409631.1 molybdopterin-guanine dinucleotide biosynthesis protein B -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22495.54 Da        Isoelectric Point: 9.6909

>NTDB_id=63160 U471_RS06965 WP_012117447.1 1356253..1356849(+) (rok) [Bacillus amyloliquefaciens CC178]
MFNEREALRLRLEQLNEAEVKVIREYQIERDKIYAKLRELDNTGSLSDTKKEFRPEKKSDSLPVLAELAAQEMRSYQKPQ
AQPQSSQPQMQSITSLPAGIPDGSTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNMTTFM
QSLIKMYPEVKKPYRGQYILEGEISQETAETANDTAAE

Nucleotide


Download         Length: 597 bp        

>NTDB_id=63160 U471_RS06965 WP_012117447.1 1356253..1356849(+) (rok) [Bacillus amyloliquefaciens CC178]
ATGTTTAATGAAAGAGAAGCGCTGCGCTTACGTTTAGAACAATTGAACGAAGCAGAGGTAAAAGTCATTCGTGAATATCA
AATAGAACGTGATAAAATATATGCAAAACTGAGAGAATTAGACAATACAGGCAGCCTGTCCGATACAAAAAAAGAGTTTC
GTCCGGAGAAAAAAAGTGACTCTCTCCCTGTGCTTGCAGAGCTTGCAGCACAGGAAATGAGAAGCTATCAAAAGCCGCAG
GCACAGCCTCAATCCTCCCAGCCGCAGATGCAGTCTATTACGTCTCTTCCCGCCGGCATTCCAGACGGTTCTACAAGAAG
AAGAAGAGGGACGGCGAGACCGGGATCAAAAGCGGCAAAACTGCGCGAAGCAGCGATTAAAACATTGAAACGCCACAATG
CAGCGATTAAAAGTTCCGAACTGCAAAAGGAAATTGAAAAGGAAAGCGGCCTTGAAATTCCTAATATGACAACATTTATG
CAAAGCTTAATTAAAATGTATCCGGAAGTGAAAAAACCATACCGCGGCCAATATATTCTTGAGGGAGAAATTTCTCAGGA
AACAGCAGAAACGGCAAATGATACGGCTGCTGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

86.082

97.98

0.843

Multiple sequence alignment