Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   LP088_RS09220 Genome accession   NZ_CP087814
Coordinates   1781382..1782320 (-) Length   312 a.a.
NCBI ID   WP_112742446.1    Uniprot ID   A0AAQ2SYL7
Organism   Moraxella bovis strain SAM109238     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1776382..1787320
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LP088_RS09205 (LP088_09130) ahcY 1776991..1778370 (+) 1380 WP_112742443.1 adenosylhomocysteinase -
  LP088_RS09210 (LP088_09135) msrAB 1778464..1780149 (+) 1686 WP_078273112.1 bifunctional peptide-methionine (S)-S-oxide reductase MsrA/peptide-methionine (R)-S-oxide reductase MsrB -
  LP088_RS09215 (LP088_09140) - 1780533..1781060 (-) 528 WP_112742445.1 methylated-DNA--[protein]-cysteine S-methyltransferase -
  LP088_RS09220 (LP088_09145) pilA 1781382..1782320 (-) 939 WP_112742446.1 signal recognition particle-docking protein FtsY Machinery gene
  LP088_RS09225 (LP088_09150) - 1782490..1783521 (+) 1032 WP_112742447.1 ABC transporter substrate-binding protein -
  LP088_RS09230 (LP088_09155) - 1783566..1785842 (-) 2277 WP_112742448.1 primosomal protein N' -
  LP088_RS09235 (LP088_09160) - 1786047..1786427 (-) 381 WP_078273117.1 Rid family detoxifying hydrolase -
  LP088_RS09240 (LP088_09165) - 1786517..1786702 (-) 186 WP_078273118.1 hypothetical protein -

Sequence

Protein


Download         Length: 312 a.a.        Molecular weight: 33615.64 Da        Isoelectric Point: 4.8893

>NTDB_id=631599 LP088_RS09220 WP_112742446.1 1781382..1782320(-) (pilA) [Moraxella bovis strain SAM109238]
MSENKSGFFARMKAGLSKSSKNLSEGLMNVLVGGKEIDDELLEEVEDQLLVADIGVDATNRIITSLTEQTARGDLIYSHS
LYKALKKELVDILEPKVAPLIIDSTKKPFVILMVGVNGVGKTTTIGKLAKRLQSEGKSVMLAAGDTFRAAATEQLQVWGE
RNDIPVVAQGQGSDSASVIFDAMQSAKAKGIDVLIADTAGRLQNKTYLMNELEKVIRVMKKADETAPHECMIVLDAGTGQ
NAISQVNLFREVAPLSGVTITKLDGTAKGGVVFNVAQTTDVPIRFIGVGEQIDDLQPFHPKEFVDALISEEK

Nucleotide


Download         Length: 939 bp        

>NTDB_id=631599 LP088_RS09220 WP_112742446.1 1781382..1782320(-) (pilA) [Moraxella bovis strain SAM109238]
ATGAGCGAGAATAAAAGCGGATTTTTTGCCCGCATGAAAGCAGGATTATCCAAATCCAGTAAGAATTTATCAGAAGGTCT
GATGAATGTCCTAGTCGGTGGCAAAGAGATTGATGATGAGTTGTTAGAAGAAGTCGAAGATCAGCTTCTGGTGGCGGACA
TTGGCGTGGATGCGACCAATCGGATTATCACGAGCCTAACCGAGCAGACGGCACGGGGCGATTTGATTTATTCGCATTCG
TTATATAAAGCCCTAAAAAAGGAGTTGGTGGACATTTTAGAACCCAAAGTTGCCCCGCTTATCATCGACTCGACCAAAAA
ACCGTTTGTGATTCTCATGGTTGGCGTTAATGGCGTGGGTAAGACCACGACCATTGGCAAACTTGCCAAACGCTTACAGA
GTGAAGGCAAATCGGTCATGCTCGCAGCAGGCGACACGTTTCGGGCGGCAGCGACTGAACAGCTTCAAGTGTGGGGCGAG
CGTAACGACATTCCTGTGGTGGCACAAGGGCAGGGTTCGGACAGTGCGTCGGTGATTTTTGATGCCATGCAGTCAGCGAA
AGCAAAGGGCATTGACGTGCTCATTGCCGATACCGCAGGGCGACTACAAAACAAAACGTATCTCATGAACGAGCTTGAAA
AAGTCATTCGTGTCATGAAAAAAGCAGATGAGACCGCCCCACATGAGTGCATGATTGTACTAGATGCTGGTACGGGTCAA
AATGCCATTAGTCAGGTCAATCTATTTAGAGAAGTCGCCCCATTATCAGGCGTTACCATTACCAAACTGGACGGCACGGC
AAAAGGCGGTGTGGTCTTTAATGTCGCCCAGACGACCGATGTCCCCATTCGCTTTATCGGCGTGGGCGAGCAGATTGATG
ATTTACAGCCCTTTCACCCCAAAGAGTTTGTAGATGCACTCATCAGCGAAGAAAAATGA

Domains

Predicted by InterproScan.

SRP54-type protein, helical bundle domain (SRP54_N)

(23-89)

SRP54-type protein, GTPase domain (SRP54)

(108-308)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

51.307

98.077

0.503