Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   U471_RS06865 Genome accession   NC_022653
Coordinates   1340432..1340896 (-) Length   154 a.a.
NCBI ID   WP_003154622.1    Uniprot ID   A0A9Q3QIJ3
Organism   Bacillus amyloliquefaciens CC178     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1335432..1345896
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U471_RS06850 (U471_14040) - 1335912..1337732 (+) 1821 WP_023356869.1 PAS domain-containing protein -
  U471_RS06855 (U471_14050) - 1337713..1338926 (-) 1214 Protein_1323 aminotransferase A -
  U471_RS19965 (U471_14060) - 1339127..1339288 (-) 162 WP_007409608.1 hypothetical protein -
  U471_RS06860 (U471_14070) cheV 1339477..1340388 (+) 912 WP_012117435.1 chemotaxis protein CheV -
  U471_RS06865 (U471_14080) kre 1340432..1340896 (-) 465 WP_003154622.1 YkyB family protein Regulator
  U471_RS06870 (U471_14090) - 1341019..1342311 (-) 1293 WP_012117436.1 MFS transporter -
  U471_RS06875 (U471_14100) - 1342387..1342881 (-) 495 WP_088462390.1 L,D-transpeptidase family protein -
  U471_RS06880 (U471_14110) - 1342956..1343819 (-) 864 WP_023356871.1 metallophosphoesterase -
  U471_RS06885 (U471_14120) fadH 1343964..1344728 (+) 765 WP_003154618.1 2,4-dienoyl-CoA reductase -
  U471_RS19700 - 1344893..1345342 (+) 450 Protein_1331 hypothetical protein -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17784.55 Da        Isoelectric Point: 10.4864

>NTDB_id=63159 U471_RS06865 WP_003154622.1 1340432..1340896(-) (kre) [Bacillus amyloliquefaciens CC178]
MDDHAYSKELQPTIENLSKAVYTVNRHAKTAPNPKYLYLLKKRALQKLVKEGKGKKIGLHFSNNPRFSQQQSDVLISIGD
YYFHMPPTKEDFQHLPHLGTLNQSYRNPKAQMSLTKAKNVLQKYVGLKEKPLAANRQQPAYHKPVFKKLGESYF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=63159 U471_RS06865 WP_003154622.1 1340432..1340896(-) (kre) [Bacillus amyloliquefaciens CC178]
ATGGACGACCACGCTTATTCGAAAGAGCTGCAGCCAACCATCGAGAATCTTTCAAAAGCTGTTTATACTGTGAACCGCCA
TGCAAAAACCGCCCCCAACCCTAAATACCTTTATCTGCTGAAAAAACGGGCATTACAAAAGCTTGTGAAAGAAGGCAAAG
GGAAAAAAATAGGGCTTCACTTTTCAAATAATCCCAGGTTTAGCCAACAGCAGTCAGACGTACTTATCTCTATCGGAGAC
TACTATTTTCACATGCCTCCAACAAAAGAAGACTTCCAGCATCTTCCGCATTTAGGTACGTTAAATCAATCGTACCGCAA
TCCTAAAGCACAAATGTCTTTGACAAAAGCGAAAAACGTATTGCAAAAATATGTGGGCTTAAAGGAAAAACCGCTTGCCG
CCAACAGGCAGCAGCCCGCTTATCATAAACCCGTATTTAAAAAACTTGGTGAGAGTTATTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(13-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

92.857

100

0.929

Multiple sequence alignment