Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   N5B57_RS17305 Genome accession   NZ_CP104595
Coordinates   3544535..3545140 (-) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain EC9952     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3539535..3550140
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N5B57_RS17285 (N5B57_17240) aes 3539572..3540531 (+) 960 WP_000801846.1 acetyl esterase -
  N5B57_RS17290 (N5B57_17245) hemH 3540528..3541490 (-) 963 WP_001250088.1 ferrochelatase -
  N5B57_RS17295 (N5B57_17250) adk 3541726..3542370 (-) 645 WP_001220233.1 adenylate kinase -
  N5B57_RS17300 (N5B57_17255) htpG 3542551..3544425 (-) 1875 WP_000678213.1 molecular chaperone HtpG -
  N5B57_RS17305 (N5B57_17260) recR 3544535..3545140 (-) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  N5B57_RS17310 (N5B57_17265) ybaB 3545140..3545469 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  N5B57_RS17315 (N5B57_17270) dnaX 3545522..3547453 (-) 1932 WP_000122008.1 DNA polymerase III subunit gamma/tau -
  N5B57_RS17320 (N5B57_17275) apt 3547582..3548133 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  N5B57_RS17325 (N5B57_17280) ybaN 3548286..3548663 (-) 378 WP_001188905.1 DUF454 family protein -
  N5B57_RS17330 (N5B57_17285) priC 3548733..3549260 (+) 528 WP_000844848.1 primosomal replication protein N'' -
  N5B57_RS17335 (N5B57_17290) rsmS 3549274..3549435 (+) 162 WP_000051146.1 pleiotropic regulatory protein RsmS -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=631578 N5B57_RS17305 WP_001195025.1 3544535..3545140(-) (recR) [Escherichia coli strain EC9952]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=631578 N5B57_RS17305 WP_001195025.1 3544535..3545140(-) (recR) [Escherichia coli strain EC9952]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGTGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGCCGTTATTTTGT
GTTGATGGGGCACCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGCCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAATCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443