Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   LP119_RS08425 Genome accession   NZ_CP087805
Coordinates   1660778..1661716 (-) Length   312 a.a.
NCBI ID   WP_264683982.1    Uniprot ID   -
Organism   Moraxella bovis strain SAM57942     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1655778..1666716
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LP119_RS08410 (LP119_08350) ahcY 1656386..1657765 (+) 1380 WP_264676980.1 adenosylhomocysteinase -
  LP119_RS08415 (LP119_08355) msrAB 1657859..1659544 (+) 1686 WP_115370163.1 bifunctional peptide-methionine (S)-S-oxide reductase MsrA/peptide-methionine (R)-S-oxide reductase MsrB -
  LP119_RS08420 (LP119_08360) - 1659929..1660456 (-) 528 WP_112742445.1 methylated-DNA--[protein]-cysteine S-methyltransferase -
  LP119_RS08425 (LP119_08365) pilA 1660778..1661716 (-) 939 WP_264683982.1 signal recognition particle-docking protein FtsY Machinery gene
  LP119_RS08430 (LP119_08370) - 1661885..1662916 (+) 1032 WP_264676983.1 ABC transporter substrate-binding protein -
  LP119_RS08435 (LP119_08375) - 1662962..1665238 (-) 2277 WP_264683981.1 primosomal protein N' -
  LP119_RS08440 (LP119_08380) - 1665443..1665823 (-) 381 WP_029102088.1 Rid family detoxifying hydrolase -
  LP119_RS08445 (LP119_08385) - 1665913..1666098 (-) 186 WP_029102089.1 hypothetical protein -

Sequence

Protein


Download         Length: 312 a.a.        Molecular weight: 33488.50 Da        Isoelectric Point: 4.8803

>NTDB_id=631544 LP119_RS08425 WP_264683982.1 1660778..1661716(-) (pilA) [Moraxella bovis strain SAM57942]
MSENKSGFFARMKAGLSKSSKNLSEGLMNVLVGGKEIDDELLEEVEDQLLVADIGVDATNRIITSLTEQTARGDLIYSHS
LYKALKKELVDILEPKVAPLIIDSTKKPFVILMVGVNGVGKTTTIGKLAKRLQSEGKSVMLAAGDTFRAAATEQLQVWGE
RNGIPVVAQGQGSDSASVIFDAMQSAKAKGIDVLIADTAGRLQNKTYLMNELEKVIRVMKKADETAPHECMIVLDAGTGQ
NAISQVNLFSEVAPLSGVTITKLDGTAKGGVVFNVAQTTDVPIRFIGVGEQIDDLQPFHPKEFVDALISEEK

Nucleotide


Download         Length: 939 bp        

>NTDB_id=631544 LP119_RS08425 WP_264683982.1 1660778..1661716(-) (pilA) [Moraxella bovis strain SAM57942]
ATGAGCGAGAATAAAAGCGGATTTTTTGCCCGCATGAAAGCAGGATTATCCAAATCCAGTAAGAATTTATCAGAAGGTCT
GATGAATGTCCTAGTCGGTGGCAAAGAGATTGATGATGAGTTGTTAGAAGAAGTCGAAGATCAGCTTCTGGTGGCGGACA
TTGGCGTGGATGCGACCAATCGGATTATCACGAGCCTAACCGAGCAGACGGCACGGGGCGATTTGATTTATTCGCACTCG
TTATATAAAGCCCTAAAAAAGGAGTTGGTGGACATTTTAGAACCCAAAGTTGCCCCGCTTATCATCGACTCGACCAAAAA
ACCGTTTGTGATTCTCATGGTTGGCGTTAATGGCGTGGGTAAGACCACGACCATTGGCAAACTTGCCAAACGCTTACAGA
GTGAAGGCAAATCGGTCATGCTCGCAGCAGGCGACACGTTTCGGGCGGCAGCGACTGAACAGCTTCAAGTGTGGGGCGAG
CGTAATGGCATTCCTGTGGTGGCACAGGGGCAGGGTTCGGACAGTGCGTCGGTGATTTTTGATGCCATGCAGTCAGCGAA
AGCAAAGGGCATTGACGTGCTCATTGCTGATACCGCAGGGCGACTACAAAACAAAACGTATCTCATGAACGAGCTTGAAA
AAGTCATTCGTGTCATGAAAAAAGCAGATGAGACCGCCCCACATGAGTGCATGATTGTACTAGATGCTGGTACGGGTCAA
AATGCCATTAGTCAGGTCAATCTATTTAGCGAAGTCGCCCCATTATCAGGCGTTACCATTACCAAACTGGACGGCACGGC
AAAAGGCGGTGTGGTCTTTAATGTCGCCCAGACGACCGATGTCCCCATTCGCTTTATCGGCGTGGGCGAGCAGATTGATG
ATTTACAGCCCTTTCACCCCAAAGAGTTTGTAGATGCACTCATCAGCGAAGAAAAATGA

Domains

Predicted by InterproScan.

SRP54-type protein, GTPase domain (SRP54)

(108-308)

SRP54-type protein, helical bundle domain (SRP54_N)

(23-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

51.307

98.077

0.503