Detailed information    

insolico Bioinformatically predicted

Overview

Name   chpA   Type   Regulator
Locus tag   LP098_RS14910 Genome accession   NZ_CP087798
Coordinates   2592538..2593425 (-) Length   295 a.a.
NCBI ID   WP_420910702.1    Uniprot ID   -
Organism   Moraxella bovis strain SAM57954     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 2587538..2598425
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LP098_RS13065 (LP098_12940) - 2590159..2590686 (-) 528 WP_078274802.1 cytochrome b -
  LP098_RS13070 (LP098_12945) - 2590771..2591271 (-) 501 WP_029103932.1 hypothetical protein -
  LP098_RS13075 (LP098_12950) - 2591398..2592507 (-) 1110 WP_244893677.1 chemotaxis protein CheB -
  LP098_RS14910 chpA 2592538..2593425 (-) 888 WP_420910702.1 response regulator Regulator

Sequence

Protein


Download         Length: 295 a.a.        Molecular weight: 33220.64 Da        Isoelectric Point: 6.6604

>NTDB_id=631494 LP098_RS14910 WP_420910702.1 2592538..2593425(-) (chpA) [Moraxella bovis strain SAM57954]
MESEFGRGSRFIIRVPLTVSVSDALIVRVADRQYAIPLVQIERVVQMNATELLTYHQSGNNTIKIDNKNYRLRYLNEILT
GNYFNEIVSGTTLPVIIIKTQTGQALALQVDEIVGSRIEIVVKPLGRQLSNLSGISAATIMGDGSVMLILDLLALMRTAQ
AKRENKEVEPVVSRRHLIMVVDDSVTVRKVTSRFLERQGFEVIVAKDGVDAIEILQDNMPDLMLLDIEMPRMDGFEVATQ
VRHSPRLSHLPIIMITSRTGEKHRDRAFEIGVNDYMGKPFQEVELLERIGKLLNI

Nucleotide


Download         Length: 888 bp        

>NTDB_id=631494 LP098_RS14910 WP_420910702.1 2592538..2593425(-) (chpA) [Moraxella bovis strain SAM57954]
GTGGAGTCGGAGTTTGGTAGGGGCTCTCGTTTTATCATCCGTGTGCCATTGACTGTATCTGTGTCAGATGCACTCATCGT
GCGTGTGGCTGACCGCCAATACGCCATCCCGCTGGTGCAGATTGAGCGTGTGGTGCAGATGAATGCCACAGAACTATTAA
CCTATCATCAATCGGGCAATAACACCATCAAGATTGATAACAAAAACTATCGTTTGCGTTATCTTAATGAAATCTTAACA
GGCAATTATTTTAATGAGATTGTCTCAGGTACGACCCTGCCTGTAATTATCATCAAAACTCAGACAGGGCAAGCCCTTGC
TTTGCAGGTAGATGAGATTGTGGGTTCTCGTATTGAGATTGTGGTCAAGCCATTAGGTCGTCAGCTTTCTAACCTATCGG
GAATCTCGGCAGCAACCATCATGGGTGATGGCTCGGTCATGCTCATCCTTGATCTGTTGGCACTCATGCGTACCGCTCAG
GCGAAACGAGAAAACAAAGAGGTGGAACCTGTCGTCAGCCGTCGTCACCTCATCATGGTGGTAGACGATTCTGTGACGGT
ACGCAAGGTCACATCTCGTTTCTTAGAACGTCAAGGTTTTGAGGTTATCGTTGCCAAAGATGGTGTTGATGCCATTGAGA
TTTTACAAGACAATATGCCCGATTTGATGCTACTTGACATTGAGATGCCACGCATGGATGGTTTTGAGGTCGCAACTCAG
GTGCGTCACAGTCCCCGTTTGAGTCATTTGCCAATCATCATGATTACATCACGAACGGGCGAAAAGCATCGAGACCGTGC
CTTCGAGATTGGTGTTAATGACTACATGGGTAAGCCGTTCCAAGAAGTGGAGCTTTTGGAACGTATTGGCAAACTGCTAA
ACATTTAG

Domains

Predicted by InterproScan.

CheW-like domain (CheW)

(24-158)

Response regulator receiver domain (Response_reg)

(178-289)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  chpA Acinetobacter baumannii strain A118

56.146

100

0.573