Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   U471_RS05275 Genome accession   NC_022653
Coordinates   1036662..1037240 (+) Length   192 a.a.
NCBI ID   WP_012117234.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens CC178     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1031662..1042240
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U471_RS20300 - 1032163..1032678 (-) 516 WP_370529535.1 methyl-accepting chemotaxis protein -
  U471_RS20305 - 1032970..1033344 (-) 375 Protein_992 protoglobin domain-containing protein -
  U471_RS05260 (U471_10510) - 1033578..1035101 (-) 1524 WP_012117232.1 FAD-dependent oxidoreductase -
  U471_RS05265 (U471_10520) - 1035226..1036083 (+) 858 WP_007610477.1 SDR family oxidoreductase -
  U471_RS05270 (U471_10530) - 1036114..1036347 (-) 234 WP_012117233.1 IDEAL domain-containing protein -
  U471_RS05275 (U471_10540) comK 1036662..1037240 (+) 579 WP_012117234.1 competence protein ComK Regulator
  U471_RS05280 (U471_10550) - 1037386..1037754 (+) 369 WP_012117235.1 iron chaperone -
  U471_RS05285 (U471_10560) - 1037781..1038152 (+) 372 WP_012117236.1 iron chaperone -
  U471_RS05290 (U471_10570) - 1038275..1038784 (+) 510 WP_012117237.1 MepB family protein -
  U471_RS05295 (U471_10580) - 1039013..1039723 (-) 711 WP_015239530.1 YrpD family protein -
  U471_RS05300 (U471_10590) - 1039919..1040188 (+) 270 WP_003155168.1 excalibur calcium-binding domain-containing protein -
  U471_RS05305 (U471_10600) - 1040203..1040538 (-) 336 WP_012117239.1 YbjQ family protein -
  U471_RS05310 (U471_10610) - 1040580..1042049 (-) 1470 WP_012117240.1 sodium:solute symporter family protein -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22301.55 Da        Isoelectric Point: 8.1419

>NTDB_id=63148 U471_RS05275 WP_012117234.1 1036662..1037240(+) (comK) [Bacillus amyloliquefaciens CC178]
MCQKTHAPLESYEVNRSTIAVLPEEIDGKMGSKVIEKDCILYVSMKPIHIIDRSCRYFGSSYAGRKAGTYEAIKISHKPP
IMVDPSNHIFLFPTLSSARPQCGWISHVHVKDFQPTAFDDTAVTFSNGKTMELEVSYHSFENQVYRTAYLRTTFQDRMGS
HVPKRQEFMLYPKEERTRMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=63148 U471_RS05275 WP_012117234.1 1036662..1037240(+) (comK) [Bacillus amyloliquefaciens CC178]
ATGTGCCAGAAAACACACGCACCCTTAGAAAGCTACGAAGTAAATCGTTCAACCATCGCTGTTTTGCCTGAGGAAATAGA
CGGTAAAATGGGGTCGAAGGTCATTGAGAAAGACTGCATTCTGTATGTCAGCATGAAGCCGATTCACATCATCGACAGAA
GCTGCCGCTACTTTGGCTCCAGCTATGCCGGGAGAAAAGCGGGAACATATGAAGCGATTAAAATTTCTCACAAGCCGCCG
ATTATGGTGGACCCTTCAAATCACATCTTTTTATTCCCTACACTTTCTTCTGCAAGGCCTCAATGCGGCTGGATATCTCA
TGTGCACGTTAAAGATTTTCAACCGACGGCATTTGATGACACAGCGGTCACGTTCTCAAACGGCAAAACGATGGAACTGG
AAGTATCCTATCATTCTTTTGAAAATCAGGTTTACAGAACCGCCTATCTCAGAACCACTTTTCAGGACAGGATGGGCAGT
CATGTCCCGAAGCGGCAGGAATTCATGCTGTATCCGAAAGAAGAGCGGACAAGAATGATCTACGACTTTATTTTGCGGGA
GCTGGGGGAGAGATATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

82.812

100

0.828

Multiple sequence alignment