Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   N5878_RS23130 Genome accession   NZ_CP104590
Coordinates   4967455..4967820 (+) Length   121 a.a.
NCBI ID   WP_003084587.1    Uniprot ID   A0A0H2ZKW2
Organism   Pseudomonas aeruginosa strain WTJH36     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4962455..4972820
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N5878_RS23100 (N5878_23100) pyrR 4963077..4963589 (-) 513 WP_003084574.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -
  N5878_RS23105 (N5878_23105) ruvX 4963701..4964135 (-) 435 WP_003121753.1 Holliday junction resolvase RuvX -
  N5878_RS23110 (N5878_23110) - 4964135..4964704 (-) 570 WP_003100947.1 YqgE/AlgH family protein -
  N5878_RS23115 (N5878_23115) - 4964753..4965646 (-) 894 WP_003160914.1 energy transducer TonB -
  N5878_RS23120 (N5878_23120) gshB 4965793..4966746 (-) 954 WP_003100943.1 glutathione synthase -
  N5878_RS23125 (N5878_23125) pilG 4967001..4967408 (+) 408 WP_003084583.1 twitching motility response regulator PilG Regulator
  N5878_RS23130 (N5878_23130) pilH 4967455..4967820 (+) 366 WP_003084587.1 twitching motility response regulator PilH Machinery gene
  N5878_RS23135 (N5878_23135) - 4967871..4968407 (+) 537 WP_003084590.1 chemotaxis protein CheW -
  N5878_RS23140 (N5878_23140) pilJ 4968492..4970540 (+) 2049 WP_003100940.1 chemotaxis chemoreceptor PilJ -
  N5878_RS23145 (N5878_23145) pilK 4970601..4971476 (+) 876 WP_003084594.1 type 4 fimbrial methyltransferase PilK -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13273.30 Da        Isoelectric Point: 5.1961

>NTDB_id=631410 N5878_RS23130 WP_003084587.1 4967455..4967820(+) (pilH) [Pseudomonas aeruginosa strain WTJH36]
MARILIVDDSPTEMYKLTAMLEKHGHQVLKAENGGDGVALARQEKPDVVLMDIVMPGLNGFQATRQLTKDAETSAIPVII
VTTKDQETDKVWGKRQGARDYLTKPVDEETLLKTINAVLAG

Nucleotide


Download         Length: 366 bp        

>NTDB_id=631410 N5878_RS23130 WP_003084587.1 4967455..4967820(+) (pilH) [Pseudomonas aeruginosa strain WTJH36]
ATGGCTCGTATTTTGATTGTTGATGACTCTCCGACCGAGATGTACAAGCTGACCGCCATGCTGGAAAAGCATGGTCACCA
GGTACTCAAGGCCGAGAACGGCGGCGACGGCGTCGCCCTGGCCCGCCAGGAAAAGCCCGACGTGGTCCTGATGGACATCG
TCATGCCCGGCCTCAACGGCTTCCAGGCGACCCGTCAATTGACCAAGGACGCCGAGACCAGCGCCATCCCGGTGATCATC
GTCACCACCAAGGACCAGGAGACCGACAAGGTCTGGGGCAAGCGCCAGGGCGCTCGCGACTACCTGACCAAGCCGGTGGA
CGAAGAGACCCTGCTGAAAACCATCAATGCGGTGCTGGCGGGCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZKW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

36.975

98.347

0.364