Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   U471_RS02010 Genome accession   NC_022653
Coordinates   399487..400440 (+) Length   317 a.a.
NCBI ID   WP_012116802.1    Uniprot ID   A7Z1C8
Organism   Bacillus amyloliquefaciens CC178     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 394487..405440
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U471_RS01990 (U471_03630) - 394533..395966 (+) 1434 WP_162303988.1 sensor histidine kinase -
  U471_RS01995 (U471_03650) rapC 396119..397267 (+) 1149 WP_012116798.1 Rap family tetratricopeptide repeat protein Regulator
  U471_RS02000 (U471_03660) phrC 397251..397370 (+) 120 WP_003156334.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  U471_RS19085 - 397519..397629 (-) 111 WP_369719092.1 YjcZ family sporulation protein -
  U471_RS02005 (U471_03680) - 397709..399073 (-) 1365 WP_012116801.1 aspartate kinase -
  U471_RS02010 (U471_03700) ceuB 399487..400440 (+) 954 WP_012116802.1 ABC transporter permease Machinery gene
  U471_RS02015 (U471_03710) - 400430..401377 (+) 948 WP_012116803.1 iron chelate uptake ABC transporter family permease subunit -
  U471_RS02020 (U471_03720) - 401371..402129 (+) 759 WP_012116804.1 ABC transporter ATP-binding protein -
  U471_RS02025 (U471_03730) - 402151..403095 (+) 945 WP_012116805.1 siderophore ABC transporter substrate-binding protein -
  U471_RS02030 (U471_03740) - 403137..404561 (-) 1425 WP_012116806.1 MDR family MFS transporter -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34945.24 Da        Isoelectric Point: 9.6741

>NTDB_id=63141 U471_RS02010 WP_012116802.1 399487..400440(+) (ceuB) [Bacillus amyloliquefaciens CC178]
MKLRYLLLLLAVLACTSIFIGVEDLSPLDIFHLNKEQAGTLFDSRLPRLVSIIIAGMSLSICGLIMQQISRNKFVSPTTA
GTMDWARLGILISLMLFTSASPLVKMSIAFVFALAGNFLFMKILERIKFNDAIFIPLVGLMLGNIVSSVATFIAYKYDLI
QNLSSWLQGDFSLVVKGRYELLYLSIPLLIIAYVYADKFTVAGMGESFSVNLGLKYKRVVNIGLIIVSLIASLVILTVGM
LPFLGLIIPNMVSIYKGDNLRSSLPHTALLGAVFVLFCDILGRVIIFPYEISIGLMVGVIGSGIFLYMLLRRKAYES

Nucleotide


Download         Length: 954 bp        

>NTDB_id=63141 U471_RS02010 WP_012116802.1 399487..400440(+) (ceuB) [Bacillus amyloliquefaciens CC178]
ATGAAGCTACGTTACTTACTTTTGCTACTGGCGGTTTTGGCGTGTACTTCTATATTTATCGGTGTAGAAGATTTGTCGCC
GCTGGATATTTTTCATTTAAATAAAGAACAGGCAGGTACATTGTTTGACAGCCGGCTGCCGCGTTTGGTGAGCATTATCA
TCGCCGGCATGAGCCTGAGCATCTGCGGATTAATCATGCAGCAGATCAGCCGGAATAAATTTGTATCGCCGACGACTGCG
GGAACGATGGATTGGGCAAGGCTCGGAATCTTGATTTCATTAATGCTTTTTACGTCAGCGAGTCCGCTTGTGAAAATGTC
TATCGCTTTCGTTTTCGCGTTGGCGGGAAATTTCCTGTTCATGAAAATCCTCGAGAGAATCAAGTTTAATGATGCGATTT
TTATTCCTCTCGTCGGTTTAATGCTTGGGAATATCGTCAGTTCAGTCGCCACGTTTATCGCATATAAATACGACCTGATC
CAAAACCTGTCGTCCTGGCTGCAGGGGGATTTCTCACTGGTCGTCAAAGGCCGGTATGAGCTTTTATATCTGAGTATCCC
GCTTTTGATCATCGCTTATGTGTATGCGGATAAATTTACGGTGGCGGGAATGGGAGAGAGCTTTTCCGTCAATCTCGGCC
TGAAATACAAACGCGTCGTTAATATCGGTCTGATTATCGTGTCGCTCATCGCTTCACTGGTGATCCTGACCGTCGGGATG
CTGCCGTTTCTCGGTTTGATCATTCCTAATATGGTGTCGATTTACAAAGGGGACAACCTGAGGAGCAGCCTGCCTCACAC
CGCTCTGCTGGGCGCTGTTTTTGTGCTGTTTTGCGACATTTTGGGAAGGGTGATCATCTTCCCGTACGAAATTTCCATCG
GCCTGATGGTCGGTGTTATCGGCAGCGGCATCTTCCTGTATATGCTGTTAAGGAGAAAAGCATATGAGTCATAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(9-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7Z1C8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

53.481

99.685

0.533

Multiple sequence alignment