Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   N5878_RS22945 Genome accession   NZ_CP104590
Coordinates   4934903..4936255 (+) Length   450 a.a.
NCBI ID   WP_016852368.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain WTJH36     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4929903..4941255
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N5878_RS22925 (N5878_22925) - 4930740..4931306 (-) 567 WP_003117889.1 hypothetical protein -
  N5878_RS22930 (N5878_22930) rsmD 4931309..4931905 (-) 597 WP_009875718.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  N5878_RS22935 (N5878_22935) - 4931905..4933392 (-) 1488 WP_016852367.1 M16 family metallopeptidase -
  N5878_RS22940 (N5878_22940) - 4933385..4934782 (-) 1398 WP_003084498.1 M16 family metallopeptidase -
  N5878_RS22945 (N5878_22945) pilA 4934903..4936255 (+) 1353 WP_016852368.1 signal recognition particle-docking protein FtsY Machinery gene
  N5878_RS22950 (N5878_22950) ftsE 4936252..4936923 (+) 672 WP_003084505.1 cell division ATP-binding protein FtsE -
  N5878_RS22955 (N5878_22955) ftsX 4936923..4937930 (+) 1008 WP_003084508.1 permease-like cell division protein FtsX -
  N5878_RS22960 (N5878_22960) rpoH 4938044..4938898 (+) 855 WP_003084510.1 RNA polymerase sigma factor RpoH -
  N5878_RS22965 (N5878_22965) - 4938963..4939568 (+) 606 WP_003084511.1 hypothetical protein -
  N5878_RS22970 (N5878_22970) mtgA 4939573..4940304 (-) 732 WP_003100972.1 monofunctional biosynthetic peptidoglycan transglycosylase -
  N5878_RS22975 (N5878_22975) - 4940341..4940718 (+) 378 WP_003084513.1 DUF423 domain-containing protein -
  N5878_RS22980 (N5878_22980) thiS 4940821..4941021 (+) 201 WP_003084514.1 sulfur carrier protein ThiS -

Sequence

Protein


Download         Length: 450 a.a.        Molecular weight: 47814.23 Da        Isoelectric Point: 4.6111

>NTDB_id=631406 N5878_RS22945 WP_016852368.1 4934903..4936255(+) (pilA) [Pseudomonas aeruginosa strain WTJH36]
MFGSNDDKKAPQGGEKKGLFGWWRKKPQAGEQPADQPVEPVSETAAAEQRAPADDVAQSLTEQPGRQQPSAAEPAEPAPV
AEAPLASGEPASAEEHSPRPEAPVAQPEPILAAEPEPEPEPEPEPVAPLAAAPAVSEPATRPGFFARLRQGLSKTSASIG
EGMASLFLGRKEIDDDLLDDIETRLLTADVGVEATTLIVQNLTKRVARKELADSGALYKALQEELASLLRPVEQPLQVDV
AREPYVILVVGVNGVGKTTTIGKLAKKLQLEGKKVMLAAGDTFRAAAVEQLQVWGERNRIPVIAQHTGADSASVIFDAVQ
AAKARGIDVLIADTAGRLHTKDNLMEELKKVRRVIGKLDETAPHEVLLVLDAGTGQNAINQAKQFNLAVELTGLALTKLD
GTAKGGVIFALAKQFGLPIRYIGVGEGIDDLRTFEADAFVQALFAERENA

Nucleotide


Download         Length: 1353 bp        

>NTDB_id=631406 N5878_RS22945 WP_016852368.1 4934903..4936255(+) (pilA) [Pseudomonas aeruginosa strain WTJH36]
ATGTTTGGTTCCAACGATGACAAGAAGGCCCCGCAGGGCGGGGAAAAGAAAGGTCTGTTCGGCTGGTGGCGGAAAAAGCC
GCAAGCCGGCGAGCAGCCTGCCGATCAGCCTGTCGAGCCGGTCTCCGAGACAGCGGCCGCCGAGCAGCGCGCGCCTGCCG
ATGACGTGGCGCAATCCCTGACAGAACAGCCAGGTCGGCAGCAGCCCTCCGCTGCCGAGCCGGCCGAGCCGGCGCCGGTT
GCCGAAGCACCGCTCGCCAGTGGCGAGCCAGCGTCGGCCGAGGAGCATTCGCCCCGGCCCGAGGCGCCCGTCGCGCAACC
CGAACCTATCCTGGCTGCCGAGCCCGAGCCCGAGCCCGAGCCCGAGCCCGAGCCCGTTGCGCCGCTGGCCGCCGCTCCGG
CAGTCAGCGAGCCGGCGACCAGGCCGGGCTTCTTCGCCCGCCTCCGGCAGGGACTGTCCAAGACCAGCGCCAGCATCGGC
GAAGGCATGGCCAGCCTGTTCCTCGGCCGCAAGGAAATCGACGACGACCTGCTCGACGACATCGAGACGCGCCTGCTGAC
CGCCGACGTCGGCGTCGAGGCCACCACCCTGATCGTGCAGAACCTGACCAAGCGCGTGGCGCGCAAGGAGCTGGCCGACA
GCGGCGCGCTGTACAAGGCGCTGCAGGAAGAGCTGGCCAGCCTGCTGCGCCCGGTGGAGCAGCCGTTGCAGGTCGACGTC
GCGCGCGAGCCCTATGTGATCCTGGTGGTCGGGGTGAACGGCGTGGGCAAGACCACCACCATCGGCAAGCTGGCGAAGAA
GCTGCAACTCGAGGGCAAGAAGGTCATGCTGGCCGCCGGCGACACCTTCCGCGCTGCCGCCGTGGAGCAGTTGCAGGTCT
GGGGCGAGCGCAACCGTATCCCGGTGATCGCCCAGCACACCGGCGCCGACTCCGCCTCGGTGATCTTCGACGCGGTGCAG
GCCGCCAAGGCCCGCGGCATCGACGTGCTGATCGCCGATACCGCCGGACGCCTGCATACCAAGGACAACCTGATGGAGGA
GCTGAAGAAGGTGCGCCGGGTGATCGGCAAGCTGGACGAGACGGCGCCCCATGAGGTCCTGCTGGTGCTCGACGCCGGCA
CCGGGCAGAACGCCATCAACCAGGCCAAGCAGTTCAACCTCGCGGTGGAGCTGACCGGCCTGGCCCTGACCAAACTGGAC
GGCACCGCCAAGGGCGGGGTGATCTTCGCCCTGGCCAAGCAGTTCGGCCTGCCGATCCGCTATATCGGTGTCGGCGAGGG
GATCGACGATCTCCGTACCTTCGAGGCCGACGCCTTCGTCCAGGCACTCTTCGCAGAGCGGGAGAACGCATGA

Domains

Predicted by InterProScan.

SRP54-type protein, GTPase domain (SRP54)

(245-444)

SRP54-type protein, helical bundle domain (SRP54_N)

(160-225)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

47.489

97.333

0.462