Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   U471_RS01795 Genome accession   NC_022653
Coordinates   335344..335781 (-) Length   145 a.a.
NCBI ID   WP_003156588.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens CC178     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 330344..340781
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U471_RS01770 (U471_03160) - 331363..332499 (+) 1137 WP_012116766.1 zinc-dependent alcohol dehydrogenase -
  U471_RS01775 (U471_03170) - 332514..332948 (+) 435 WP_012116767.1 RDD family protein -
  U471_RS01780 (U471_03180) - 333066..333344 (+) 279 WP_263612330.1 YckD family protein -
  U471_RS01785 (U471_03190) - 333448..334884 (+) 1437 WP_012116768.1 glycoside hydrolase family 1 protein -
  U471_RS01790 (U471_03200) nin/comJ 334925..335323 (-) 399 WP_007609299.1 competence protein ComJ Regulator
  U471_RS01795 (U471_03210) nucA/comI 335344..335781 (-) 438 WP_003156588.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  U471_RS01800 (U471_03220) hxlB 336140..336697 (-) 558 WP_007409354.1 6-phospho-3-hexuloisomerase -
  U471_RS01805 (U471_03230) hxlA 336694..337329 (-) 636 WP_012116769.1 3-hexulose-6-phosphate synthase -
  U471_RS01810 (U471_03240) - 337561..337923 (+) 363 WP_012116770.1 winged helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16072.35 Da        Isoelectric Point: 8.4850

>NTDB_id=63138 U471_RS01795 WP_003156588.1 335344..335781(-) (nucA/comI) [Bacillus amyloliquefaciens CC178]
MKTLKALLLVLIIIAGAVAALIKGDLFSDNEQTVQKSDYDKVILFPSDRYPETAKHIKDAIKEGHSSICTIDRDGVHKRR
EQSLKHVPVKTGYDRDEWPMAVCKQGGNNASVEYISPADNRGAGSWVGHQLTNDPDGTRVLFKIK

Nucleotide


Download         Length: 438 bp        

>NTDB_id=63138 U471_RS01795 WP_003156588.1 335344..335781(-) (nucA/comI) [Bacillus amyloliquefaciens CC178]
TTGAAAACATTAAAAGCACTGCTGCTTGTTCTTATCATCATTGCCGGAGCAGTCGCGGCCCTGATCAAGGGTGATCTTTT
CTCAGATAACGAGCAGACCGTTCAGAAGAGTGATTACGACAAAGTAATCTTATTTCCGTCCGATCGATATCCGGAAACAG
CAAAGCATATTAAGGACGCGATAAAAGAAGGACATTCCAGCATATGCACCATTGACAGAGACGGAGTACATAAGCGGCGT
GAGCAATCTCTTAAACATGTGCCTGTCAAAACGGGATACGATAGGGATGAATGGCCGATGGCGGTTTGTAAACAGGGCGG
AAACAACGCCTCCGTAGAATATATTTCTCCGGCAGACAACCGCGGAGCCGGCTCTTGGGTCGGACACCAGCTTACCAATG
ATCCCGACGGAACGAGAGTATTATTTAAAATCAAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

73.81

86.897

0.641

Multiple sequence alignment