Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   LP363_RS08050 Genome accession   NZ_CP087763
Coordinates   1635666..1637468 (+) Length   600 a.a.
NCBI ID   WP_095670317.1    Uniprot ID   -
Organism   Lactobacillus gasseri strain Lg637     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1630666..1642468
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LP363_RS08025 (LP363_08025) - 1631027..1631809 (-) 783 WP_003656143.1 threonine/serine exporter family protein -
  LP363_RS08030 (LP363_08030) - 1631832..1633379 (-) 1548 WP_095670321.1 ABC-F family ATP-binding cassette domain-containing protein -
  LP363_RS08035 (LP363_08035) - 1633406..1633780 (-) 375 WP_095670320.1 hypothetical protein -
  LP363_RS08040 (LP363_08040) - 1634004..1634273 (+) 270 WP_095670319.1 hypothetical protein -
  LP363_RS08045 (LP363_08045) - 1634378..1635502 (-) 1125 WP_095670318.1 LCP family protein -
  LP363_RS08050 (LP363_08050) pepF 1635666..1637468 (+) 1803 WP_095670317.1 oligoendopeptidase F Regulator
  LP363_RS08055 (LP363_08055) - 1637625..1642016 (-) 4392 WP_230630530.1 N506_1709 family sortase-dependent adhesin -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 68729.76 Da        Isoelectric Point: 4.7766

>NTDB_id=631319 LP363_RS08050 WP_095670317.1 1635666..1637468(+) (pepF) [Lactobacillus gasseri strain Lg637]
MALPTRNEVSDELKWDLSRVFKNDQEWEQEYKQVAQEIKNLSKFKGTLAKSGKELYEGITEILAINRRLEKVYVYATMSS
DVDTSNTHYLGFVVKAQSLANQMSAAIAFVDPEILSIPAKTLTKFMQDEPRLENYRHRLEQITQKRPHTLPANEEKIIAD
AGDAMGTSANTFNVLTNSDMEYGYVQDEDGEMVQLSDGLYSLLIQSQDRNVRKNAFDVMYASYGQFKNSLASTLSGEVKA
HNFNARVHKYNSAREAALSENSVPTAVYDTLIKEVNSHLDLLHRYVSLRKKILGLKDLQMYDMYVPLTGKPVLSYNFNEA
KEEARKALAPLGEDYLKHVDYIFNNRVIDVVESQNKVTGAYSGGAYDTDPYELLNWEDNLDSLYTLVHETGHSVHSWYTR
NTQPYVYGDYPIFVAEIASTTNENILTEYFLDKITDPKTRAFVLNHYLDSFKGTLFRQTQFAEFEQFIHEADANGQPLTA
DVLDEFYGDLNQRYYGDSVEPGGEIAMEWSRIPHFYYNFYVYQYATGFAAATALANKVVHGTDKERDAYINFLKSGSSDY
PTEIMKRAGVDMTKADYLRDTFDTFEKRLNEFEKIVDELN

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=631319 LP363_RS08050 WP_095670317.1 1635666..1637468(+) (pepF) [Lactobacillus gasseri strain Lg637]
ATGGCTCTTCCAACAAGAAATGAAGTATCTGATGAGCTTAAGTGGGACTTAAGTCGTGTTTTTAAAAACGATCAAGAATG
GGAACAAGAATATAAGCAGGTTGCGCAAGAAATCAAGAACTTAAGCAAATTCAAGGGAACACTTGCCAAATCTGGTAAAG
AGCTCTACGAAGGAATTACAGAAATTTTAGCTATAAATCGACGCTTAGAAAAAGTATATGTTTACGCCACGATGTCAAGC
GACGTTGACACGAGCAATACTCATTACCTCGGTTTTGTTGTCAAAGCTCAAAGCTTAGCTAATCAAATGAGTGCTGCGAT
TGCTTTTGTCGATCCAGAAATCTTGTCTATTCCAGCAAAAACACTTACTAAGTTTATGCAAGATGAACCACGTTTAGAAA
ATTACCGGCATCGCCTTGAACAAATTACCCAAAAGCGTCCGCATACTCTACCAGCAAATGAAGAAAAAATCATTGCTGAC
GCTGGAGACGCAATGGGAACGTCTGCTAACACTTTTAATGTCTTAACCAATTCTGATATGGAATATGGCTACGTCCAAGA
TGAAGACGGTGAAATGGTTCAATTATCTGACGGCTTATATTCGCTTTTAATTCAATCTCAAGACCGCAATGTTCGCAAAA
ACGCCTTTGACGTGATGTACGCAAGCTACGGACAGTTTAAAAATAGTCTTGCTTCAACTTTATCAGGCGAAGTAAAGGCT
CACAATTTTAATGCTCGAGTACATAAATATAATTCAGCTAGAGAAGCTGCTTTAAGTGAAAATAGTGTTCCAACAGCTGT
TTACGATACCTTAATCAAGGAAGTAAATAGCCACCTCGACTTACTTCACCGCTACGTTTCATTAAGAAAGAAAATTTTAG
GCTTAAAAGACCTTCAAATGTACGATATGTACGTGCCATTAACTGGGAAGCCCGTTCTTTCTTATAACTTTAACGAAGCA
AAAGAAGAAGCTAGAAAGGCTTTAGCACCATTAGGAGAGGACTATTTAAAGCACGTTGATTACATTTTTAATAACCGCGT
AATTGACGTAGTTGAAAGTCAAAATAAAGTAACTGGTGCATATTCAGGTGGTGCTTACGATACTGATCCATATGAACTCC
TTAACTGGGAAGATAACCTTGATTCACTCTACACACTAGTTCATGAGACTGGTCACTCTGTCCACTCTTGGTATACAAGA
AACACTCAACCTTATGTCTATGGTGATTATCCAATTTTCGTTGCTGAAATTGCTTCAACCACTAATGAGAACATCTTGAC
TGAATATTTCTTAGATAAGATTACTGATCCTAAAACTCGAGCATTTGTCTTGAACCATTATCTTGATTCATTTAAAGGCA
CACTCTTCCGTCAAACTCAATTTGCAGAATTTGAACAATTTATTCATGAAGCTGATGCTAATGGCCAACCATTAACAGCC
GATGTCCTGGATGAATTTTATGGCGACTTAAACCAAAGATATTATGGAGATAGCGTAGAACCTGGTGGAGAAATTGCTAT
GGAATGGTCACGTATTCCTCACTTCTACTACAACTTCTACGTTTACCAATACGCAACAGGTTTTGCAGCTGCAACTGCTC
TTGCTAATAAAGTTGTTCACGGCACTGACAAAGAACGTGATGCTTATATTAATTTCTTAAAATCAGGTTCTTCAGATTAC
CCAACAGAAATTATGAAACGAGCTGGCGTTGATATGACTAAGGCTGATTACTTGAGGGATACTTTTGATACCTTTGAAAA
ACGTCTTAATGAATTTGAAAAAATCGTTGATGAATTAAATTAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(203-582)

Oligopeptidase F (Peptidase_M3_N)

(113-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

51.684

99

0.512