Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   LL948_RS08180 Genome accession   NZ_CP087726
Coordinates   1590653..1592350 (+) Length   565 a.a.
NCBI ID   WP_404337596.1    Uniprot ID   -
Organism   Planococcus rifietoensis strain QJJ-917     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1585653..1597350
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LL948_RS08155 (LL948_08130) xseB 1586049..1586285 (+) 237 WP_058380874.1 exodeoxyribonuclease VII small subunit -
  LL948_RS08160 (LL948_08135) - 1586282..1587160 (+) 879 WP_404337590.1 polyprenyl synthetase family protein -
  LL948_RS08165 (LL948_08140) dxs 1587255..1589165 (+) 1911 WP_404337592.1 1-deoxy-D-xylulose-5-phosphate synthase -
  LL948_RS08170 (LL948_08145) - 1589162..1590007 (+) 846 WP_404337594.1 TlyA family RNA methyltransferase -
  LL948_RS08175 (LL948_08150) ahrC 1590185..1590634 (+) 450 WP_058380870.1 transcriptional regulator AhrC/ArgR -
  LL948_RS08180 (LL948_08155) recN 1590653..1592350 (+) 1698 WP_404337596.1 DNA repair protein RecN Machinery gene
  LL948_RS08185 (LL948_08160) spo0A 1592384..1593133 (+) 750 WP_404337598.1 sporulation transcription factor Spo0A -
  LL948_RS08190 (LL948_08165) - 1593338..1594069 (+) 732 WP_101190262.1 glycerophosphodiester phosphodiesterase family protein -
  LL948_RS08195 (LL948_08170) - 1594138..1594374 (-) 237 WP_101190263.1 DUF2627 domain-containing protein -
  LL948_RS08200 (LL948_08175) - 1594503..1596545 (+) 2043 WP_404337601.1 sigma 54-interacting transcriptional regulator -

Sequence

Protein


Download         Length: 565 a.a.        Molecular weight: 63757.86 Da        Isoelectric Point: 5.9422

>NTDB_id=631258 LL948_RS08180 WP_404337596.1 1590653..1592350(+) (recN) [Planococcus rifietoensis strain QJJ-917]
MLRELDIRNFAIIDTLSVSFTEGMTVLTGETGAGKSIIIDAVHLLAGGRGSQEFIRHGAQKAEIEGLFHIESEKHPVHKK
LEDFGIQASDGDVLLRRELNGKGKNVCRINGKLVTISILREVGAALIDIHGQHETQELMDEKQHLHLLDQFAGKLLTKAK
EGYSHTFDKYTKLKREFASYNENEQQIAQRIDLLTFQLREIEEAQLVPGEEETLLEERKRLQNFTKIFESISQAHEAIQG
ESKGLDWVGNAMSELEHAAAVDEQFKEASESVTGAFYQLQDTSTEIKRILDQLEFDPERLNEIEQRLALLQSLKRKYGAS
VEDMLLYQEEQADELDKLLNRDQRLRLDQEKLKELTEDLRIEAEELTMLRKQAAAKLSKAIMEQLKELHMGKASFSVQFN
LLPKGKFDRFGQDSIAFHISTNVGEPLKPLTKVASGGELSRMMLALKTIFSKHQGITSIIFDEVDTGVSGRVAQAIAEKI
AAIARHSQVLCISHLPQVAAMADQHLFIEKKVSKDRTTTSVKELAGRKRTEEMSRMLSGAEITELTLQHADELLTLARDR
KLLMK

Nucleotide


Download         Length: 1698 bp        

>NTDB_id=631258 LL948_RS08180 WP_404337596.1 1590653..1592350(+) (recN) [Planococcus rifietoensis strain QJJ-917]
ATGCTGCGAGAATTGGATATCCGCAATTTTGCGATTATCGATACATTATCGGTCAGTTTTACAGAAGGCATGACAGTTCT
GACAGGGGAAACCGGTGCCGGGAAATCGATTATCATCGATGCCGTGCACTTATTAGCCGGAGGGCGAGGAAGCCAGGAAT
TCATTCGCCACGGGGCCCAAAAAGCTGAGATCGAAGGCTTGTTCCATATCGAAAGCGAAAAGCATCCGGTCCATAAAAAA
CTGGAGGATTTCGGGATCCAAGCAAGTGACGGGGATGTCTTATTGCGTCGCGAGTTGAATGGCAAAGGCAAAAACGTCTG
CCGCATTAACGGAAAACTTGTCACCATTTCCATTTTACGTGAAGTCGGTGCCGCATTGATCGACATCCACGGCCAGCACG
AGACGCAGGAGTTGATGGATGAAAAGCAGCATCTTCATCTATTGGATCAATTTGCCGGGAAATTATTGACCAAAGCCAAA
GAAGGCTATAGCCATACATTTGATAAATATACGAAATTGAAACGTGAATTTGCCAGCTATAATGAAAACGAGCAGCAAAT
CGCACAGCGCATCGACTTATTGACATTCCAATTGCGTGAAATCGAAGAAGCCCAGCTCGTGCCGGGGGAAGAAGAAACTT
TGCTGGAAGAACGCAAACGATTGCAGAATTTCACCAAAATCTTCGAATCGATTTCACAAGCCCATGAAGCGATTCAAGGG
GAGTCAAAGGGGCTCGATTGGGTTGGCAATGCGATGAGCGAACTTGAACACGCAGCTGCTGTCGATGAGCAATTCAAAGA
AGCGTCGGAATCGGTTACCGGGGCATTCTATCAGCTCCAGGACACATCGACGGAAATCAAGCGCATACTGGACCAGTTGG
AATTCGACCCGGAACGGCTCAATGAAATCGAACAGCGCCTGGCATTATTGCAATCCTTGAAACGCAAATACGGCGCGTCG
GTCGAGGACATGCTTTTGTATCAGGAAGAGCAAGCAGACGAGCTCGATAAATTGCTCAACCGCGACCAGCGCCTGCGCCT
CGATCAGGAGAAACTAAAGGAATTGACCGAGGATTTGCGCATCGAAGCGGAAGAACTGACGATGCTGAGAAAGCAAGCGG
CAGCCAAATTATCGAAAGCGATCATGGAACAGCTAAAAGAGCTCCATATGGGCAAAGCCTCGTTTTCGGTGCAGTTCAAC
TTGCTGCCAAAAGGCAAATTCGACCGTTTCGGCCAGGACAGCATCGCATTCCATATTTCGACGAATGTCGGGGAACCGTT
GAAGCCGTTGACGAAAGTAGCTTCAGGCGGCGAATTGTCGCGCATGATGCTCGCGCTGAAGACGATTTTTTCCAAGCACC
AAGGCATCACATCGATCATTTTCGATGAAGTCGACACAGGAGTCAGCGGGCGCGTGGCGCAGGCAATTGCCGAGAAAATT
GCCGCCATTGCCCGCCATTCACAAGTGCTGTGCATTTCCCATTTGCCGCAAGTCGCCGCCATGGCAGACCAGCATCTGTT
TATCGAGAAAAAAGTATCGAAAGACCGCACGACAACATCGGTGAAAGAATTGGCAGGGCGCAAGCGCACTGAAGAAATGA
GCCGCATGCTGTCAGGGGCGGAAATCACCGAATTGACCTTGCAGCATGCTGATGAATTGCTGACTTTGGCGAGGGACCGG
AAGCTGTTGATGAAATAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-510)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

51.93

100

0.524