Detailed information NTG0631248

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: N5879_RS07000
• Genome accession: NZ_CP104588
• Coordinates: 1510797..1511801 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain WTJH32
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1505797..1516801

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
N5879_RS06970 (N5879_06970)	fghA	1505889..1506740 (+)	852	WP_003113869.1	S-formylglutathione hydrolase	-
N5879_RS06975 (N5879_06975)	ispF	1506811..1507284 (+)	474	WP_003098560.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
N5879_RS06980 (N5879_06980)	truD	1507281..1508348 (+)	1068	WP_016852567.1	tRNA pseudouridine(13) synthase TruD	-
N5879_RS06985 (N5879_06985)	surE	1508336..1509085 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
N5879_RS06990 (N5879_06990)	-	1509118..1509753 (+)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
N5879_RS06995 (N5879_06995)	-	1509799..1510692 (+)	894	WP_016852568.1	peptidoglycan DD-metalloendopeptidase family protein	-
N5879_RS07000 (N5879_07000)	rpoS	1510797..1511801 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
N5879_RS07005 (N5879_07005)	fdxA	1512228..1512551 (-)	324	WP_003119354.1	ferredoxin FdxA	-
N5879_RS07010 (N5879_07010)	mutS	1512618..1515185 (-)	2568	WP_003113873.1	DNA mismatch repair protein MutS	-
N5879_RS07015 (N5879_07015)	-	1515311..1516318 (-)	1008	WP_003098486.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=631248 N5879_RS07000 WP_003113871.1 1510797..1511801(+) (rpoS) [Pseudomonas aeruginosa strain WTJH32]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=631248 N5879_RS07000 WP_003113871.1 1510797..1511801(+) (rpoS) [Pseudomonas aeruginosa strain WTJH32]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCCCCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTGGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGACCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAATGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653