Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   N5879_RS02120 Genome accession   NZ_CP104588
Coordinates   468548..469906 (+) Length   452 a.a.
NCBI ID   WP_023124962.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain WTJH32     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 463548..474906
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N5879_RS02100 (N5879_02100) - 464385..464951 (-) 567 WP_003117889.1 hypothetical protein -
  N5879_RS02105 (N5879_02105) rsmD 464954..465550 (-) 597 WP_009875718.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  N5879_RS02110 (N5879_02110) - 465550..467037 (-) 1488 WP_016852367.1 M16 family metallopeptidase -
  N5879_RS02115 (N5879_02115) - 467030..468427 (-) 1398 WP_003084498.1 M16 family metallopeptidase -
  N5879_RS02120 (N5879_02120) pilA 468548..469906 (+) 1359 WP_023124962.1 signal recognition particle-docking protein FtsY Machinery gene
  N5879_RS02125 (N5879_02125) ftsE 469903..470574 (+) 672 WP_003084505.1 cell division ATP-binding protein FtsE -
  N5879_RS02130 (N5879_02130) ftsX 470574..471581 (+) 1008 WP_003084508.1 permease-like cell division protein FtsX -
  N5879_RS02135 (N5879_02135) rpoH 471695..472549 (+) 855 WP_003084510.1 RNA polymerase sigma factor RpoH -
  N5879_RS02140 (N5879_02140) - 472614..473219 (+) 606 WP_003084511.1 hypothetical protein -
  N5879_RS02145 (N5879_02145) mtgA 473224..473955 (-) 732 WP_003100972.1 monofunctional biosynthetic peptidoglycan transglycosylase -
  N5879_RS02150 (N5879_02150) - 473992..474369 (+) 378 WP_003084513.1 DUF423 domain-containing protein -
  N5879_RS02155 (N5879_02155) thiS 474472..474672 (+) 201 WP_003084514.1 sulfur carrier protein ThiS -

Sequence

Protein


Download         Length: 452 a.a.        Molecular weight: 48040.46 Da        Isoelectric Point: 4.5823

>NTDB_id=631233 N5879_RS02120 WP_023124962.1 468548..469906(+) (pilA) [Pseudomonas aeruginosa strain WTJH32]
MFGSNDDKKAPQGGEKKGLFGWWRKKPQAGEQPADQPVEPVSETAAAEQRAPADDVAQSLTEQPGRQQPSAAEPAEPAPV
AEAPLASGEPASAEEHSPRPEAPVAQPEPILAAEPEPEPEPEPEPEPVAPLAAAPAVSEPATRPGFFARLRQGLSKTSAS
IGEGMASLFLGRKEIDDDLLDDIETRLLTADVGVEATTLIVQNLTKRVARKELADSGALYKALQEELASLLRPVEQPLQV
DVAREPYVILVVGVNGVGKTTTIGKLAKKLQLEGKKVMLAAGDTFRAAAVEQLQVWGERNRIPVIAQHTGADSASVIFDA
VQAAKARGIDVLIADTAGRLHTKDNLMEELKKVRRVIGKLDETAPHEVLLVLDAGTGQNAINQAKQFNLAVELTGLALTK
LDGTAKGGVIFALAKQFGLPIRYIGVGEGIDDLRTFEADAFVQALFAERENA

Nucleotide


Download         Length: 1359 bp        

>NTDB_id=631233 N5879_RS02120 WP_023124962.1 468548..469906(+) (pilA) [Pseudomonas aeruginosa strain WTJH32]
ATGTTTGGTTCCAACGATGACAAGAAGGCCCCGCAGGGCGGGGAAAAGAAAGGTCTGTTCGGCTGGTGGCGGAAAAAGCC
GCAAGCCGGCGAGCAGCCTGCCGATCAGCCTGTCGAGCCGGTCTCCGAGACAGCGGCCGCCGAGCAGCGCGCGCCTGCCG
ATGACGTGGCGCAATCCCTGACAGAACAGCCAGGTCGGCAGCAGCCCTCCGCTGCCGAGCCGGCCGAGCCGGCGCCGGTT
GCCGAAGCACCGCTCGCCAGTGGCGAGCCAGCGTCGGCCGAGGAGCATTCGCCCCGGCCCGAGGCGCCCGTCGCGCAACC
CGAACCTATCCTGGCTGCCGAGCCCGAGCCCGAGCCCGAGCCCGAGCCCGAGCCCGAGCCCGTTGCGCCGCTGGCCGCCG
CTCCGGCAGTCAGCGAGCCGGCGACCAGGCCGGGCTTCTTCGCCCGCCTCCGGCAGGGACTGTCCAAGACCAGCGCCAGC
ATCGGCGAAGGCATGGCCAGCCTGTTCCTCGGCCGCAAGGAAATCGACGACGACCTGCTCGACGACATCGAGACGCGCCT
GCTGACCGCCGACGTCGGCGTCGAGGCCACCACCCTGATCGTGCAGAACCTGACCAAGCGCGTGGCGCGCAAGGAGCTGG
CCGACAGCGGCGCGCTGTACAAGGCGCTGCAGGAAGAGCTGGCCAGCCTGCTGCGCCCGGTGGAGCAGCCGTTGCAGGTC
GACGTCGCGCGCGAGCCCTATGTGATCCTGGTGGTCGGGGTGAACGGCGTGGGCAAGACCACCACCATCGGCAAGCTGGC
GAAGAAGCTGCAACTCGAGGGCAAGAAGGTCATGCTGGCCGCCGGCGACACCTTCCGCGCTGCCGCCGTGGAGCAGTTGC
AGGTCTGGGGCGAGCGCAACCGTATCCCGGTGATCGCCCAGCACACCGGCGCCGACTCCGCCTCGGTGATCTTCGACGCG
GTGCAGGCCGCCAAGGCCCGCGGCATCGACGTGCTGATCGCCGATACCGCCGGACGCCTGCATACCAAGGACAACCTGAT
GGAGGAGCTGAAGAAGGTGCGCCGGGTGATCGGCAAGCTGGACGAGACGGCGCCCCATGAGGTCCTGCTGGTGCTCGACG
CCGGCACCGGGCAGAACGCCATCAACCAGGCCAAGCAGTTCAACCTCGCGGTGGAGCTGACCGGCCTGGCCCTGACCAAA
CTGGACGGCACCGCCAAGGGCGGGGTGATCTTCGCCCTGGCCAAGCAGTTCGGCCTGCCGATCCGCTATATCGGTGTCGG
CGAGGGGATCGACGATCTCCGTACCTTCGAGGCCGACGCCTTCGTCCAGGCACTCTTCGCAGAGCGGGAGAACGCATGA

Domains

Predicted by InterProScan.

SRP54-type protein, helical bundle domain (SRP54_N)

(162-227)

SRP54-type protein, GTPase domain (SRP54)

(247-446)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

47.273

97.345

0.46