Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   LPS07_RS16930 Genome accession   NZ_CP087716
Coordinates   3507487..3509715 (+) Length   742 a.a.
NCBI ID   WP_032062879.1    Uniprot ID   A0A009QTW7
Organism   Acinetobacter pittii strain AP2044     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3502487..3514715
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPS07_RS16905 (LPS07_16905) lnt 3502868..3504427 (+) 1560 WP_069120437.1 apolipoprotein N-acyltransferase -
  LPS07_RS16910 (LPS07_16910) csaA 3504429..3504767 (-) 339 WP_005079284.1 tRNA-binding protein -
  LPS07_RS16915 (LPS07_16915) - 3504913..3505257 (-) 345 WP_005804170.1 hypothetical protein -
  LPS07_RS16920 (LPS07_16920) gspG 3505525..3506109 (-) 585 WP_032062881.1 type II secretion system major pseudopilin GspG -
  LPS07_RS16925 (LPS07_16925) gspF 3506133..3507338 (-) 1206 WP_005065941.1 type II secretion system inner membrane protein GspF -
  LPS07_RS16930 (LPS07_16930) priA 3507487..3509715 (+) 2229 WP_032062879.1 primosomal protein N' Machinery gene
  LPS07_RS16935 (LPS07_16935) kefB 3509792..3511636 (+) 1845 WP_069120440.1 monovalent cation:proton antiporter-2 (CPA2) family protein -
  LPS07_RS16940 (LPS07_16940) hslO 3511800..3512675 (+) 876 WP_002114728.1 Hsp33 family molecular chaperone HslO -
  LPS07_RS16945 (LPS07_16945) - 3512814..3513425 (+) 612 WP_002115157.1 LysE family translocator -
  LPS07_RS16950 (LPS07_16950) cbpA 3513571..3514527 (+) 957 WP_032062877.1 DnaJ C-terminal domain-containing protein -

Sequence

Protein


Download         Length: 742 a.a.        Molecular weight: 84047.81 Da        Isoelectric Point: 8.5611

>NTDB_id=631222 LPS07_RS16930 WP_032062879.1 3507487..3509715(+) (priA) [Acinetobacter pittii strain AP2044]
MTITPKPDSVVYRVRVAVPVHLYDTFDYTLTQAQYERAHVGSRVAISFGRQNLIGIITEKVDPSESFTGTFQLKAISDLL
DEQPILDEQVLSLLTWSAQYYQFPIGEVMQTALPALLRQGKPMDVLFHLWKITPCDNVEALLKRSVKQQDAYQILKLHPA
GTTENILNLSGVETATLKALQKKGLVDCTLEPHDFSPSPVQLAQMPLTLNEDQKKATQHVVNAQHQYQAFLLDGLTGSGK
TEVYLHIMHEVLKQGKQVLVLVPEIGLTPQTISRFKSRFNCDIALLHSGLNDSKRLQAWQQAQTGKASIILGTRSAIYTP
LPRLGLIILDEEHDLSYKQQEGFRYHARDVALYRGHLQNCPVILGSATPSIDSYYLVETGKLTSLQLNQRAGHALLPKMH
LIDLKIVKKQHGISQPLIEQIKHTLARKEQVLIFLNRRGYAPVLVCESCGWQANCPHCDAHFTLHTQPYSYLHCHHCGTV
HRLPDHCPECQQKSLKTLGAGTAKVEEHLQELFPDYDVIRVDRDSTSRVGSWQKIYDRIHQNKPTILLGTQMLAKGHHFP
HVTLVAILDIDAGLLSVDIRAPERTAQLIVQVAGRAGRGEHKGHVYLQTLRPDHPLLTTLIEKDYRAVAKQTLAERKVAL
LPPYRYAVLIRAESKDRDYTLHFLNEAAEQLRQIAGEIVDIWGPIPAPMERKAGRYRAHMVILSADRARLHFYLRQWWSQ
LVHAPRQHQLRLSIDVDPQEFN

Nucleotide


Download         Length: 2229 bp        

>NTDB_id=631222 LPS07_RS16930 WP_032062879.1 3507487..3509715(+) (priA) [Acinetobacter pittii strain AP2044]
ATGACCATAACGCCAAAGCCTGATTCAGTTGTTTATCGTGTGCGTGTAGCCGTACCTGTACATCTGTACGACACTTTTGA
CTATACACTCACCCAAGCACAATATGAACGGGCTCATGTAGGCTCACGCGTCGCTATTTCATTTGGGCGCCAAAACCTGA
TTGGCATCATTACTGAAAAAGTTGATCCAAGTGAATCATTTACAGGCACCTTTCAGCTTAAAGCCATTTCTGACCTTTTA
GACGAACAGCCTATTTTAGATGAACAAGTTTTAAGTTTATTGACATGGTCGGCTCAGTATTACCAATTTCCAATTGGCGA
GGTCATGCAAACCGCCCTACCCGCATTATTGCGTCAGGGCAAACCAATGGATGTTTTGTTCCATCTTTGGAAAATCACGC
CATGTGATAATGTTGAAGCACTTCTTAAACGCTCTGTTAAGCAACAAGACGCGTATCAAATTTTAAAGTTACATCCTGCC
GGAACTACAGAGAATATTCTTAATCTAAGTGGTGTAGAAACGGCTACGCTTAAAGCACTTCAAAAGAAAGGACTGGTTGA
CTGTACGCTTGAACCACACGACTTTAGCCCATCGCCTGTTCAATTGGCACAAATGCCGCTCACGCTAAATGAAGACCAAA
AGAAAGCAACTCAGCACGTCGTAAACGCGCAGCATCAATACCAAGCCTTTTTATTAGATGGTTTAACAGGAAGTGGTAAA
ACTGAAGTTTATCTGCACATCATGCACGAGGTTCTAAAGCAAGGTAAACAAGTACTGGTGTTAGTTCCAGAAATTGGTTT
AACCCCTCAAACGATTTCTCGTTTTAAGTCTCGTTTTAACTGTGATATTGCTCTATTACACTCAGGCTTAAATGACTCCA
AACGCCTACAAGCATGGCAACAGGCCCAGACTGGTAAAGCATCTATTATTTTAGGAACACGCTCTGCGATCTATACGCCA
CTGCCACGTTTGGGCTTAATCATTTTAGATGAAGAACATGACCTCTCTTATAAACAGCAAGAAGGTTTCCGTTACCATGC
ACGTGATGTCGCACTGTACCGAGGTCACTTACAAAACTGTCCAGTTATTTTAGGTTCAGCAACACCGAGCATCGATAGTT
ATTATTTGGTCGAAACTGGTAAATTAACTTCACTGCAACTTAACCAACGTGCAGGCCATGCGCTTTTGCCTAAAATGCAT
TTGATTGACCTTAAAATTGTCAAAAAGCAACATGGAATTAGCCAACCTCTTATTGAGCAAATCAAGCATACGTTAGCAAG
AAAAGAACAGGTTTTAATCTTTTTAAACCGTCGTGGCTATGCACCTGTACTGGTCTGTGAAAGTTGTGGGTGGCAAGCAA
ATTGTCCACATTGTGATGCACATTTTACGTTGCACACTCAGCCTTATTCTTATTTACACTGCCACCACTGCGGTACTGTT
CATCGCTTACCCGATCACTGCCCTGAATGCCAGCAAAAAAGCCTAAAAACCCTAGGTGCTGGAACAGCTAAGGTTGAAGA
GCACTTACAAGAACTATTTCCAGACTATGATGTGATTCGGGTTGACCGTGACAGCACCAGTCGTGTCGGTAGCTGGCAAA
AAATCTATGATCGGATTCATCAAAACAAACCAACAATTTTGCTTGGCACTCAAATGCTGGCAAAAGGTCATCATTTCCCA
CACGTGACTTTGGTTGCCATTTTAGATATTGATGCGGGGTTACTTAGTGTCGACATCCGCGCGCCAGAACGTACTGCGCA
GTTAATTGTACAAGTCGCTGGACGTGCAGGTCGTGGTGAACACAAAGGCCATGTTTATTTACAGACCTTAAGACCAGATC
ACCCTTTACTAACCACGCTCATCGAAAAAGATTATCGGGCGGTTGCTAAACAGACTCTTGCGGAACGTAAAGTCGCATTG
CTGCCACCTTATCGTTATGCAGTACTGATACGTGCAGAATCTAAAGATCGTGACTATACCTTACATTTTTTAAATGAAGC
GGCGGAACAATTACGCCAAATTGCAGGTGAAATTGTTGATATTTGGGGTCCAATTCCAGCACCGATGGAACGTAAAGCTG
GGCGCTACCGCGCCCACATGGTGATTTTATCTGCTGACCGTGCTCGCCTACATTTTTACTTAAGGCAATGGTGGTCACAA
TTGGTTCATGCACCACGGCAGCATCAACTTCGGCTATCAATTGATGTTGATCCGCAAGAATTTAATTAG

Domains

Predicted by InterproScan.

Primosomal protein N C-terminal domain (PriA_C)

(643-738)

Type III restriction enzyme, res subunit (ResIII)

(208-370)

3DNA-binding domain (3BD) (PriA_3primeBD)

(15-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009QTW7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

98.248

100

0.982