Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   LPS07_RS02370 Genome accession   NZ_CP087716
Coordinates   483643..484527 (+) Length   294 a.a.
NCBI ID   WP_069119516.1    Uniprot ID   -
Organism   Acinetobacter pittii strain AP2044     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 478643..489527
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPS07_RS02345 (LPS07_02345) - 478957..480204 (-) 1248 WP_002119535.1 YihY family inner membrane protein -
  LPS07_RS02350 (LPS07_02350) wrbA 480565..481167 (+) 603 WP_081318513.1 NAD(P)H:quinone oxidoreductase -
  LPS07_RS02355 (LPS07_02355) xpt 481219..481794 (-) 576 WP_002119547.1 xanthine phosphoribosyltransferase -
  LPS07_RS02360 (LPS07_02360) - 481867..482580 (-) 714 WP_002119525.1 DUF3108 domain-containing protein -
  LPS07_RS02365 (LPS07_02365) - 482739..483410 (-) 672 WP_002119526.1 hypothetical protein -
  LPS07_RS02370 (LPS07_02370) tonB2 483643..484527 (+) 885 WP_069119516.1 energy transducer TonB Machinery gene
  LPS07_RS02375 (LPS07_02375) ybeY 484579..485055 (-) 477 WP_069119518.1 rRNA maturation RNase YbeY -
  LPS07_RS02380 (LPS07_02380) phoL 485065..486153 (-) 1089 WP_002119513.1 PhoH family protein -
  LPS07_RS02385 (LPS07_02385) miaB 486191..487642 (-) 1452 WP_002119558.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -

Sequence

Protein


Download         Length: 294 a.a.        Molecular weight: 33601.15 Da        Isoelectric Point: 7.6075

>NTDB_id=631203 LPS07_RS02370 WP_069119516.1 483643..484527(+) (tonB2) [Acinetobacter pittii strain AP2044]
MLNKRSLSIEPFHHWWQDRVFIAATILAILLHIFVLLIHFAMPSPSEQSTKEIAISIRPNNQPVVQADFLAQADQQGSGA
FREAHRTSSDTPNPMLNDASTGDTELESLQKIQQQRELKFEEKVLMTVLSWQKQADASQRKKELEQLQSQFQAKAAMVAS
LEAQYLQRQQDFSRQQKIKTVDGIQAKKDASAAYLDKFREKVELYGNRYYPEEAKQQQLRGEVRLMVILNAQGGIRAIRL
LESSGHPVLDEAAKSSVRRGAPFGHFDANMKDISELRIVRTWRFDPAEAEFEVH

Nucleotide


Download         Length: 885 bp        

>NTDB_id=631203 LPS07_RS02370 WP_069119516.1 483643..484527(+) (tonB2) [Acinetobacter pittii strain AP2044]
ATGTTGAACAAAAGAAGTTTATCCATAGAGCCTTTTCATCATTGGTGGCAAGACCGAGTGTTTATTGCCGCAACAATATT
GGCAATCTTACTGCATATTTTTGTATTGCTCATTCACTTTGCCATGCCTAGCCCCTCAGAGCAATCTACTAAAGAAATTG
CAATTTCAATTCGGCCAAACAATCAGCCAGTTGTTCAGGCAGATTTTTTAGCGCAAGCAGATCAGCAAGGCTCGGGCGCA
TTTCGTGAAGCTCATCGGACTTCTAGTGATACTCCAAATCCGATGCTCAATGATGCTTCAACTGGAGATACTGAGTTAGA
AAGTTTGCAAAAGATTCAGCAGCAAAGAGAGCTTAAATTTGAAGAAAAAGTTTTAATGACGGTTTTGAGTTGGCAGAAAC
AAGCGGATGCAAGCCAAAGAAAAAAAGAACTAGAACAATTACAAAGTCAATTTCAAGCAAAAGCTGCCATGGTTGCAAGC
CTTGAAGCACAATATTTGCAACGCCAACAAGATTTCAGCCGTCAGCAAAAAATCAAAACAGTAGATGGTATTCAAGCAAA
GAAAGATGCTTCGGCTGCTTATTTGGATAAGTTCCGTGAAAAAGTAGAGCTTTATGGCAACCGCTATTATCCTGAAGAAG
CCAAACAGCAACAGCTAAGAGGTGAAGTGCGTTTAATGGTTATTTTGAATGCTCAAGGGGGAATTCGTGCAATTCGTTTG
CTTGAAAGCTCAGGTCATCCAGTTCTAGATGAAGCAGCGAAGTCTTCAGTACGCCGCGGCGCACCATTTGGGCATTTTGA
TGCCAATATGAAAGATATTTCGGAGTTGCGTATTGTACGTACTTGGCGTTTTGACCCAGCTGAAGCTGAATTTGAGGTTC
ACTAA

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(207-284)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

89.456

100

0.895