Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   LPW13_RS03240 Genome accession   NZ_CP087715
Coordinates   819831..821045 (-) Length   404 a.a.
NCBI ID   WP_230438015.1    Uniprot ID   -
Organism   Microbulbifer celer strain KCTC 12973     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 814831..826045
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPW13_RS03210 (LPW13_03210) - 815017..816312 (+) 1296 WP_230438009.1 hypothetical protein -
  LPW13_RS03215 (LPW13_03215) - 816473..817408 (+) 936 WP_230438010.1 hypothetical protein -
  LPW13_RS03220 (LPW13_03220) - 817453..817854 (+) 402 WP_230438011.1 hypothetical protein -
  LPW13_RS03225 (LPW13_03225) yacG 818037..818243 (-) 207 WP_230438012.1 DNA gyrase inhibitor YacG -
  LPW13_RS03230 (LPW13_03230) coaE 818255..818875 (-) 621 WP_230438013.1 dephospho-CoA kinase -
  LPW13_RS03235 (LPW13_03235) - 818933..819817 (-) 885 WP_230438014.1 A24 family peptidase -
  LPW13_RS03240 (LPW13_03240) pilC 819831..821045 (-) 1215 WP_230438015.1 type II secretion system F family protein Machinery gene
  LPW13_RS03245 (LPW13_03245) pilB 821173..822885 (-) 1713 WP_230438016.1 type IV-A pilus assembly ATPase PilB Machinery gene
  LPW13_RS18135 - 823391..823855 (+) 465 WP_268932668.1 pilin -
  LPW13_RS03260 (LPW13_03260) - 823927..825408 (+) 1482 WP_230438017.1 O-antigen ligase -

Sequence

Protein


Download         Length: 404 a.a.        Molecular weight: 43672.49 Da        Isoelectric Point: 9.2771

>NTDB_id=631168 LPW13_RS03240 WP_230438015.1 819831..821045(-) (pilC) [Microbulbifer celer strain KCTC 12973]
MANAAIATTYVYKGVDTKGNKVEGELSGTSPALIKAQLRRQGIIANKVQKKPKPLLGGKKRIKPGDIAIFTRQMATMMKA
GVPLVQSFEIVADGLDNPALKELIFKIRDDVASGTAFADALRRQPLYFDDLFCNLVASGEQSGALETMLDRIATYKEKTE
SLKAKIKKAMTYPIAVVVVAVVVTAILLVKVVPQFAETFSSFGAELPAFTLFVLSISEWMQDNWFFAFIALVIGIGGTLE
VKKRNKNVANFFDKLMLKLPIIGQITYNSIAARFARTLSTTFAAGVPLIDALKSVAGATGNVVYEEATLKIRDSVATGIP
LNGAMRTSGLYPTMLVQMAAIGEESGALDEMLAKAADFYEEAVDNMVDNLTTLMEPMIMAVLGILVGGLMIAMYLPIFQL
GQVM

Nucleotide


Download         Length: 1215 bp        

>NTDB_id=631168 LPW13_RS03240 WP_230438015.1 819831..821045(-) (pilC) [Microbulbifer celer strain KCTC 12973]
ATGGCCAACGCCGCAATTGCAACCACATACGTATATAAGGGTGTGGATACCAAGGGCAATAAAGTTGAAGGGGAGCTAAG
CGGCACAAGCCCTGCATTGATTAAAGCCCAGCTGCGCCGCCAGGGTATTATCGCCAACAAAGTCCAGAAAAAACCCAAGC
CCCTTCTCGGTGGTAAGAAAAGGATCAAGCCAGGCGATATTGCAATTTTCACCCGCCAAATGGCGACTATGATGAAAGCG
GGCGTGCCTCTGGTTCAAAGCTTTGAGATTGTTGCTGACGGTCTGGATAATCCTGCCCTGAAAGAACTAATCTTCAAGAT
TCGAGACGATGTTGCTTCGGGTACCGCTTTTGCCGATGCGTTGCGTCGACAGCCACTCTATTTTGATGATCTCTTTTGTA
ATCTGGTTGCGTCAGGTGAGCAATCTGGTGCACTGGAGACAATGCTTGACCGGATTGCCACCTACAAGGAGAAGACCGAG
TCGCTGAAAGCGAAAATCAAAAAGGCAATGACCTACCCTATTGCGGTAGTTGTGGTCGCAGTTGTTGTTACCGCGATTTT
GCTGGTGAAGGTGGTCCCCCAGTTCGCGGAAACTTTCTCCAGTTTTGGGGCTGAACTGCCGGCATTTACTCTGTTTGTTC
TTAGTATCTCAGAGTGGATGCAGGACAACTGGTTTTTTGCTTTCATCGCTCTCGTCATTGGTATCGGTGGTACATTGGAA
GTTAAGAAACGCAACAAGAATGTGGCGAACTTCTTCGATAAGCTCATGTTGAAGCTGCCCATTATCGGTCAAATCACATA
CAACTCAATTGCCGCCCGTTTTGCCCGTACGCTATCCACCACCTTTGCCGCCGGTGTTCCTCTTATTGATGCACTCAAGT
CTGTGGCCGGCGCTACCGGCAATGTCGTGTATGAGGAAGCAACACTCAAGATTCGCGACTCCGTGGCAACCGGTATCCCA
CTCAATGGCGCCATGCGCACCTCAGGCCTTTATCCAACCATGCTGGTACAGATGGCCGCGATCGGCGAGGAGTCAGGCGC
ACTGGATGAAATGCTGGCTAAAGCTGCAGACTTCTATGAAGAGGCCGTCGATAACATGGTCGACAATCTGACCACCCTGA
TGGAACCCATGATCATGGCGGTACTCGGCATTTTGGTGGGAGGCCTGATGATCGCCATGTACCTCCCAATTTTCCAGCTC
GGTCAGGTTATGTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(70-193)

Type II secretion system (T2SS), protein F (T2SSF)

(274-396)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

63.704

100

0.639
  pilC Acinetobacter baumannii D1279779

60.396

100

0.604
  pilC Acinetobacter baylyi ADP1

60.705

98.267

0.597
  pilC Legionella pneumophila strain ERS1305867

56.091

97.525

0.547
  pilG Neisseria gonorrhoeae MS11

42.929

98.02

0.421
  pilG Neisseria meningitidis 44/76-A

42.677

98.02

0.418
  pilC Vibrio cholerae strain A1552

42.677

98.02

0.418
  pilC Vibrio campbellii strain DS40M4

39.75

99.01

0.394
  pilC Thermus thermophilus HB27

35.663

100

0.366