Detailed information    

insolico Bioinformatically predicted

Overview

Name   epdL   Type   Machinery gene
Locus tag   LPQ35_RS08985 Genome accession   NZ_CP087714
Coordinates   1541119..1542663 (+) Length   514 a.a.
NCBI ID   WP_346297624.1    Uniprot ID   -
Organism   Geoglobus acetivorans strain SBH6     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1536119..1547663
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPQ35_RS08945 (LPQ35_08900) - 1536383..1536793 (+) 411 WP_193808424.1 DUF1641 domain-containing protein -
  LPQ35_RS08950 (LPQ35_08905) - 1536830..1537261 (+) 432 WP_193808425.1 hypothetical protein -
  LPQ35_RS08955 (LPQ35_08910) - 1537228..1537755 (+) 528 WP_193808426.1 PUA domain-containing protein -
  LPQ35_RS08960 (LPQ35_08915) - 1537752..1538744 (-) 993 WP_193808427.1 L-threonylcarbamoyladenylate synthase -
  LPQ35_RS08965 (LPQ35_08920) - 1538824..1539213 (-) 390 WP_048093557.1 DUF473 domain-containing protein -
  LPQ35_RS08970 (LPQ35_08925) - 1539219..1539935 (-) 717 WP_193808428.1 proteasome assembly chaperone family protein -
  LPQ35_RS08975 (LPQ35_08930) - 1539986..1540294 (+) 309 WP_193808429.1 DUF5611 family protein -
  LPQ35_RS08980 (LPQ35_08935) - 1540291..1540935 (-) 645 WP_193808430.1 YIP1 family protein -
  LPQ35_RS08985 (LPQ35_08940) epdL 1541119..1542663 (+) 1545 WP_346297624.1 type II/IV secretion system ATPase subunit Machinery gene
  LPQ35_RS08990 (LPQ35_08945) - 1542647..1544554 (+) 1908 WP_193808622.1 type II secretion system F family protein -
  LPQ35_RS08995 (LPQ35_08950) - 1544504..1545331 (-) 828 WP_193808621.1 EamA family transporter -
  LPQ35_RS09000 (LPQ35_08955) - 1545530..1547032 (+) 1503 WP_193808620.1 Na+/H+ antiporter -

Sequence

Protein


Download         Length: 514 a.a.        Molecular weight: 59732.62 Da        Isoelectric Point: 5.4563

>NTDB_id=631165 LPQ35_RS08985 WP_346297624.1 1541119..1542663(+) (epdL) [Geoglobus acetivorans strain SBH6]
MRLKLSFRKKEKEEPARPEAEVKLEEVKSEEEPEYVLVEEYWIEEPFSKIQIRFNKETQEHVYYVVVPKLDNHLFSVYYV
LKNTVVEYLESDVEQVDDRVKHLEEMSRKLLKELGIDLEEEDFQKIFYHLKSDFIEYGPITPLMNDRLIEDISCNGYNKP
LYIYHRNYQNIRTNITFSEDELDMFVIKLAQMSGKHISIAEPLLDASLPDGSRIQMTLAKEVTDHGSTFTIRKFRDEPVT
PVDLIAWGTFSIEQMAYLWLCIENKRSLIFAGGTASGKTTSMNAVSIFIPRSSKIVTIEDTREIMLPHENWIPAVTRETG
KVVDMYDLLRAALRQRPEYIIVGEVRGKEALTLFQAMSTGHTTYSTLHADSVNGVIHRLENPPINVPRAMIEALDIVSIQ
AQVFMGKKRVRRNLEIAEIIGVDPHTKIMRTTTVFTWDSSKDEHVMVGSSKALEELRIMRNWSRKELEQELKRREAVLKY
MLDKNIRDFKEVAGIIQTYQIDPDKVVSEFGIQI

Nucleotide


Download         Length: 1545 bp        

>NTDB_id=631165 LPQ35_RS08985 WP_346297624.1 1541119..1542663(+) (epdL) [Geoglobus acetivorans strain SBH6]
GTGAGGTTGAAACTCTCTTTTCGAAAAAAGGAAAAGGAAGAACCTGCCAGACCCGAAGCTGAGGTAAAGCTGGAAGAAGT
CAAATCAGAAGAAGAGCCGGAATACGTTCTTGTAGAGGAATATTGGATAGAAGAACCGTTCTCCAAGATTCAAATAAGGT
TTAATAAAGAGACCCAGGAACATGTGTATTATGTGGTTGTTCCTAAGCTTGATAATCACCTGTTCTCCGTGTATTATGTT
CTGAAAAATACCGTTGTGGAATATCTTGAAAGCGATGTGGAGCAGGTGGATGACAGAGTAAAGCATCTTGAAGAAATGTC
GAGAAAGCTGCTGAAAGAGCTTGGAATAGACCTTGAGGAGGAGGACTTTCAGAAGATATTTTACCACCTCAAGTCCGACT
TCATTGAATACGGCCCCATCACCCCCCTCATGAATGACCGCTTGATAGAGGACATCTCCTGCAACGGCTACAACAAACCC
CTCTACATCTACCACCGCAACTACCAGAACATCAGAACAAACATCACCTTCAGTGAAGATGAGCTGGACATGTTCGTCAT
AAAGCTTGCCCAGATGTCGGGCAAGCACATAAGCATAGCCGAACCCCTGCTCGACGCATCCCTTCCAGACGGATCCAGAA
TCCAGATGACCTTGGCTAAAGAGGTAACAGACCACGGCTCCACATTCACCATAAGAAAGTTCAGAGATGAACCTGTAACC
CCTGTCGACCTCATCGCCTGGGGAACCTTCAGCATAGAGCAGATGGCCTACCTCTGGCTCTGCATAGAGAACAAGAGGTC
CCTCATCTTCGCAGGAGGAACCGCAAGCGGAAAAACCACATCCATGAACGCCGTCTCAATCTTCATCCCGAGAAGCTCAA
AGATAGTAACCATTGAGGACACAAGAGAGATAATGCTCCCCCACGAGAACTGGATTCCCGCAGTCACAAGGGAAACGGGA
AAGGTCGTGGACATGTATGATCTGCTCAGAGCAGCCTTGAGACAGAGACCCGAATACATAATAGTCGGAGAAGTCAGGGG
AAAGGAGGCATTAACCCTCTTCCAGGCAATGTCCACGGGCCACACCACCTACTCAACACTCCATGCTGACTCCGTCAATG
GCGTCATCCACAGGCTTGAAAACCCGCCCATAAACGTCCCCAGAGCCATGATCGAAGCTTTGGACATAGTCAGCATCCAG
GCCCAGGTCTTCATGGGCAAGAAGAGGGTGAGAAGAAACCTGGAGATAGCAGAGATCATAGGCGTTGACCCCCACACAAA
GATCATGAGAACCACAACAGTCTTCACCTGGGACTCAAGCAAGGACGAGCACGTAATGGTCGGCAGCTCAAAAGCCCTCG
AAGAACTCAGAATCATGAGGAACTGGTCGAGAAAGGAACTCGAACAGGAGCTGAAGAGAAGGGAAGCAGTCCTCAAATAC
ATGCTCGACAAAAACATAAGAGACTTTAAGGAAGTTGCCGGAATAATCCAGACCTATCAGATAGATCCGGATAAGGTGGT
GAGCGAATTTGGTATTCAGATCTGA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(146-384)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  epdL Methanoculleus thermophilus strain DSM 2373

47.985

100

0.486