Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   N5877_RS05145 Genome accession   NZ_CP104586
Coordinates   1126761..1127090 (-) Length   109 a.a.
NCBI ID   WP_003104586.1    Uniprot ID   Q9HZ87
Organism   Pseudomonas aeruginosa strain WTJH6     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1121761..1132090
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N5877_RS05130 (N5877_05130) uvrB 1123148..1125160 (-) 2013 WP_003104590.1 excinuclease ABC subunit UvrB Machinery gene
  N5877_RS05135 (N5877_05135) - 1125348..1126544 (+) 1197 WP_003104588.1 amino acid aminotransferase -
  N5877_RS05145 (N5877_05145) comEA/comE1 1126761..1127090 (-) 330 WP_003104586.1 ComEA family DNA-binding protein Machinery gene
  N5877_RS05150 (N5877_05150) - 1127281..1129278 (-) 1998 WP_010895647.1 polysaccharide biosynthesis protein -
  N5877_RS05155 (N5877_05155) - 1129843..1130951 (-) 1109 Protein_1012 IS3 family transposase -
  N5877_RS05160 (N5877_05160) - 1131029..1132048 (-) 1020 WP_003113413.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 11351.31 Da        Isoelectric Point: 8.0459

>NTDB_id=631147 N5877_RS05145 WP_003104586.1 1126761..1127090(-) (comEA/comE1) [Pseudomonas aeruginosa strain WTJH6]
MHLIKSALLLILFACLPFSASAAPVAVAKNPLAATTPATTVSPGEQVNINTVDEAALIRGLNGVGEAKARAILEYRAAHG
PFVSVDQLLEVKGVGPALLEKNRARIVIE

Nucleotide


Download         Length: 330 bp        

>NTDB_id=631147 N5877_RS05145 WP_003104586.1 1126761..1127090(-) (comEA/comE1) [Pseudomonas aeruginosa strain WTJH6]
ATGCACCTAATCAAATCCGCTCTGCTTCTCATCCTGTTCGCCTGTCTTCCGTTTTCGGCTTCCGCCGCACCGGTCGCCGT
CGCCAAGAATCCGCTGGCCGCAACGACACCTGCGACGACCGTGTCGCCGGGGGAGCAGGTCAATATCAATACGGTCGACG
AGGCCGCCCTGATACGGGGGCTCAACGGTGTCGGCGAGGCCAAGGCCAGGGCGATCCTCGAGTATCGTGCGGCCCATGGT
CCGTTCGTCTCGGTGGATCAACTGCTGGAAGTGAAAGGGGTAGGCCCGGCGTTGCTGGAGAAGAACCGGGCGCGGATCGT
CATCGAGTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(44-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9HZ87

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

40.385

95.413

0.385