Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   LO767_RS02580 Genome accession   NZ_CP087705
Coordinates   560369..560926 (+) Length   185 a.a.
NCBI ID   WP_233049072.1    Uniprot ID   -
Organism   Halopseudomonas aestusnigri strain GOM5     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 555369..565926
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LO767_RS02570 (LO767_02570) argJ 557985..559202 (+) 1218 WP_233049070.1 bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ -
  LO767_RS02575 (LO767_02575) - 559242..559766 (-) 525 WP_233049071.1 GspH/FimT family pseudopilin -
  LO767_RS18775 - 559941..560354 (+) 414 WP_373315089.1 GspH/FimT family pseudopilin -
  LO767_RS02580 (LO767_02580) pilV 560369..560926 (+) 558 WP_233049072.1 type IV pilus modification protein PilV Machinery gene
  LO767_RS02585 (LO767_02585) - 560931..561725 (+) 795 WP_233049073.1 PilW family protein -
  LO767_RS02590 (LO767_02590) - 561722..562267 (+) 546 WP_233049074.1 PilX N-terminal domain-containing pilus assembly protein -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 19939.63 Da        Isoelectric Point: 4.0360

>NTDB_id=631080 LO767_RS02580 WP_233049072.1 560369..560926(+) (pilV) [Halopseudomonas aestusnigri strain GOM5]
MTTPRSEQSGFSMMEVLITLLLISISILGMVAMQAQSISFAQDSIQRNTAAMLAEDLMEMMRADSIRVLDVAGLPRDQSD
YYKAAGEAFPAEPASCSPLPAAAEERLGCWAARAQEALPDAAGLIEDDFHICRSATPNVCGATGSAIEVQLAWRVKDGDC
LDAAVDVEADDYDGTICRYRLRAEL

Nucleotide


Download         Length: 558 bp        

>NTDB_id=631080 LO767_RS02580 WP_233049072.1 560369..560926(+) (pilV) [Halopseudomonas aestusnigri strain GOM5]
ATGACGACTCCGCGCAGCGAGCAATCCGGCTTCAGTATGATGGAAGTTCTCATTACTCTACTGCTTATAAGTATCAGTAT
CCTGGGTATGGTTGCGATGCAGGCGCAAAGCATCTCGTTCGCTCAGGACTCTATTCAGCGTAATACGGCTGCAATGCTGG
CTGAGGATTTGATGGAAATGATGCGTGCCGACAGCATTCGTGTTCTGGATGTCGCCGGCCTACCACGCGATCAATCTGAT
TATTACAAAGCAGCTGGAGAAGCCTTCCCCGCCGAGCCCGCCTCCTGCTCTCCGCTGCCTGCTGCAGCTGAAGAAAGGCT
GGGGTGTTGGGCGGCGCGGGCTCAAGAAGCTCTGCCTGATGCTGCTGGCTTGATTGAAGACGATTTTCACATTTGCCGGT
CTGCCACTCCCAATGTCTGCGGTGCTACAGGGTCTGCAATTGAAGTGCAGTTGGCATGGCGAGTGAAGGATGGGGACTGT
TTGGATGCCGCTGTGGATGTTGAGGCGGACGACTACGATGGCACCATTTGTCGCTATCGCTTAAGAGCGGAGTTGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(6-30)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

50.562

96.216

0.486