Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   Q783_RS10980 Genome accession   NC_022606
Coordinates   2302804..2304174 (-) Length   456 a.a.
NCBI ID   WP_023179629.1    Uniprot ID   U5SFS5
Organism   Carnobacterium inhibens subsp. gilichinskyi     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2297804..2309174
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q783_RS10955 (Q783_11185) epsC 2297964..2298494 (-) 531 WP_023179620.1 serine O-acetyltransferase EpsC -
  Q783_RS10960 (Q783_11190) gltX 2298840..2300309 (-) 1470 WP_023179622.1 glutamate--tRNA ligase -
  Q783_RS10965 (Q783_11195) ispF 2300379..2300876 (-) 498 WP_023179623.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  Q783_RS10970 (Q783_11200) ispD 2300891..2301604 (-) 714 WP_023179625.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  Q783_RS10975 (Q783_11205) - 2301616..2302728 (-) 1113 WP_023179627.1 PIN/TRAM domain-containing protein -
  Q783_RS10980 (Q783_11210) radA 2302804..2304174 (-) 1371 WP_023179629.1 DNA repair protein RadA Machinery gene
  Q783_RS10985 (Q783_11215) - 2304386..2304925 (-) 540 WP_023179631.1 dUTPase -
  Q783_RS10990 (Q783_11220) - 2305166..2306269 (+) 1104 WP_043945832.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 49636.17 Da        Isoelectric Point: 8.3160

>NTDB_id=63107 Q783_RS10980 WP_023179629.1 2302804..2304174(-) (radA) [Carnobacterium inhibens subsp. gilichinskyi]
MAKKKTTKFVCQACGYESPKWMGRCPNCGSWNQMEEEIVADKNDRRSRVSMTGKTAKAEAIQDINVSKVPRVKTELKELN
RVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSAQLNLAGGKVLYVSGEESASQIKMRANRLGVKGADFYIYPETDMGAIRQ
TIEDLKPDYVIIDSIQTMNQPDITGVVGSVSQVRESTADLMKIAKTNNIAIFIVGHVTKEGAIAGPRMLEHMVDTVLYFE
GERHHTFRILRAVKNRFGSTNEIGIFEMREGGLVEVLNPSEMFLEERLSGATGSAVVASMEGSRPILAEIQSLITPTAFG
NAKRTASGLDHNRVSLIMAVLEKRAGLLLQNQDAYLKSAGGVKLDEPAIDLAIAISVASSYQEKETKETDCFIGEIGLTG
EIRRVSRIEQRVNEATKLGFKRIMIPKNNIGGWEFPSNVDIIGVTTISEAIKKAFS

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=63107 Q783_RS10980 WP_023179629.1 2302804..2304174(-) (radA) [Carnobacterium inhibens subsp. gilichinskyi]
GTGGCAAAAAAGAAAACAACAAAGTTTGTCTGCCAAGCATGTGGTTATGAATCACCTAAATGGATGGGTCGTTGTCCAAA
TTGTGGCAGTTGGAACCAAATGGAAGAAGAAATCGTTGCAGATAAAAATGATCGTAGAAGTCGTGTCAGTATGACAGGTA
AAACGGCTAAGGCTGAAGCAATTCAAGACATAAACGTATCTAAAGTTCCCAGAGTCAAAACAGAATTAAAAGAGTTGAAT
CGTGTTTTAGGCGGTGGAGTAGTTCCAGGCTCACTAGTTCTAATCGGAGGAGACCCAGGTATCGGAAAATCGACTCTTTT
ACTGCAAGTTTCAGCTCAATTGAATCTAGCAGGTGGAAAAGTGTTATACGTAAGTGGTGAAGAGAGCGCTAGCCAGATTA
AAATGCGGGCGAATCGATTGGGTGTTAAAGGTGCTGACTTTTATATTTATCCAGAAACGGATATGGGTGCTATAAGACAA
ACAATTGAAGATTTGAAACCTGATTATGTTATTATTGATTCTATTCAAACTATGAATCAACCAGATATCACTGGAGTAGT
AGGAAGTGTTTCTCAAGTTAGAGAAAGCACAGCTGATTTAATGAAAATTGCAAAAACGAATAATATTGCTATTTTTATAG
TGGGACATGTTACAAAAGAAGGGGCTATCGCTGGTCCACGTATGTTGGAACATATGGTAGACACTGTATTGTATTTTGAA
GGAGAAAGGCATCATACTTTCCGTATTTTAAGAGCTGTTAAAAACCGATTTGGCTCTACCAATGAGATTGGGATCTTTGA
AATGCGTGAAGGTGGGTTAGTTGAAGTGTTAAACCCTTCAGAAATGTTTCTAGAGGAACGGTTATCTGGAGCTACAGGAT
CTGCTGTAGTGGCTTCAATGGAAGGATCGCGACCAATTTTAGCTGAAATCCAGTCTTTGATCACACCGACTGCTTTTGGG
AATGCTAAGCGAACAGCAAGTGGCTTAGATCATAATCGTGTATCGTTGATTATGGCGGTGTTGGAAAAAAGAGCAGGATT
GTTGTTGCAAAACCAAGATGCCTATTTAAAATCAGCAGGTGGCGTAAAATTAGATGAACCTGCGATCGACTTAGCGATCG
CCATCAGTGTCGCTTCTAGTTACCAAGAAAAAGAAACAAAAGAAACCGACTGTTTTATCGGAGAAATCGGCTTGACTGGA
GAAATCAGACGTGTGAGCCGAATTGAACAAAGGGTAAATGAAGCGACTAAACTAGGGTTTAAACGCATCATGATTCCGAA
AAATAATATTGGCGGATGGGAATTCCCTAGTAATGTAGATATTATTGGAGTGACAACTATTTCTGAAGCAATAAAGAAAG
CTTTTTCTTAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)

Subunit ChlI of Mg-chelatase (ChlI)

(363-429)

AAA domain (AAA_25)

(69-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB U5SFS5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

70.833

100

0.708
  radA Streptococcus pneumoniae D39

70.833

100

0.708
  radA Streptococcus pneumoniae R6

70.833

100

0.708
  radA Streptococcus pneumoniae TIGR4

70.833

100

0.708
  radA Streptococcus mitis NCTC 12261

70.833

100

0.708
  radA Streptococcus mitis SK321

70.833

100

0.708
  radA Bacillus subtilis subsp. subtilis str. 168

67.396

100

0.675

Multiple sequence alignment