Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   N5875_RS09955 Genome accession   NZ_CP104578
Coordinates   2313645..2314433 (+) Length   262 a.a.
NCBI ID   WP_030325322.1    Uniprot ID   A0ABW6XU99
Organism   Streptomyces sp. SJL17-4     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2308645..2319433
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N5875_RS09940 - 2309030..2309560 (+) 531 WP_338493163.1 TerD family protein -
  N5875_RS09945 - 2309639..2312530 (-) 2892 WP_318207512.1 vitamin B12-dependent ribonucleotide reductase -
  N5875_RS09950 nrdR 2312702..2313211 (-) 510 WP_073819696.1 transcriptional regulator NrdR -
  N5875_RS09955 dinR/lexA 2313645..2314433 (+) 789 WP_030325322.1 transcriptional repressor LexA Regulator
  N5875_RS09960 - 2314540..2316513 (-) 1974 WP_338493167.1 ATP-dependent DNA helicase -
  N5875_RS09965 - 2316564..2318318 (-) 1755 WP_338499131.1 IucA/IucC family siderophore biosynthesis protein -
  N5875_RS09970 - 2318497..2319183 (-) 687 WP_338493169.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 262 a.a.        Molecular weight: 28354.09 Da        Isoelectric Point: 6.9852

>NTDB_id=630957 N5875_RS09955 WP_030325322.1 2313645..2314433(+) (dinR/lexA) [Streptomyces sp. SJL17-4]
MTTTADSATITAQDRSQGRLEPVHAMNDTSMNGEDPGRPARALPGRPPGIRADSSGLTDRQRRVIEVIRDSVQRRGYPPS
MREIGQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRGSDQPSTQPTDTTGKPAASYVPLVGRIAAGGPILAEES
VEDVFPLPRQLVGDGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLDGEATVKRFKREDGHVWLLPHNAA
YQPIPGDEATILGKVVAVLRRV

Nucleotide


Download         Length: 789 bp        

>NTDB_id=630957 N5875_RS09955 WP_030325322.1 2313645..2314433(+) (dinR/lexA) [Streptomyces sp. SJL17-4]
GTGACCACCACCGCAGACAGTGCCACCATCACCGCCCAGGACCGCTCCCAGGGCCGACTCGAGCCGGTGCACGCCATGAA
TGACACAAGCATGAACGGTGAGGACCCCGGGCGACCCGCCCGTGCCCTCCCCGGGCGACCTCCAGGCATCCGAGCCGACA
GCTCCGGTCTCACCGACCGGCAGCGCAGGGTCATCGAAGTCATCCGCGACTCGGTCCAGCGGCGCGGCTACCCGCCGTCG
ATGCGCGAGATCGGGCAGGCCGTCGGCCTGTCCAGCACGTCCTCGGTGGCGCACCAGCTCATGGCGCTGGAGCGCAAGGG
CTTCCTCCGCCGGGACCCGCACCGCCCCCGGGCGTACGAGGTGCGCGGCTCCGACCAGCCGAGCACCCAGCCGACGGACA
CCACGGGCAAGCCCGCCGCCTCGTACGTGCCCCTGGTCGGCCGGATCGCGGCCGGTGGCCCGATCCTCGCCGAGGAGTCC
GTCGAGGACGTCTTCCCTCTCCCCCGGCAGCTTGTCGGTGACGGCGAGCTGTTCGTCCTCAAGGTCGTCGGCGACTCGAT
GATCGAGGCCGCCATCTGTGACGGCGACTGGGTCACCGTCCGCCGCCAGCCCGTCGCGGAGAACGGCGACATCGTCGCGG
CCATGCTGGACGGCGAGGCCACGGTCAAGCGCTTCAAGCGCGAGGACGGTCACGTCTGGCTGCTCCCGCACAACGCGGCG
TACCAGCCGATCCCCGGCGACGAGGCGACCATCCTCGGCAAGGTCGTGGCGGTGCTGCGGCGGGTCTGA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(144-256)

LexA DNA binding domain (LexA_DNA_bind)

(55-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

46.226

80.916

0.374