Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   N5875_RS01575 Genome accession   NZ_CP104578
Coordinates   360411..361460 (-) Length   349 a.a.
NCBI ID   WP_338491382.1    Uniprot ID   -
Organism   Streptomyces sp. SJL17-4     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 355411..366460
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N5875_RS01550 - 356323..356569 (-) 247 Protein_309 SMP-30/gluconolactonase/LRE family protein -
  N5875_RS01555 - 356824..356949 (+) 126 WP_318210391.1 hypothetical protein -
  N5875_RS01560 - 357019..357243 (-) 225 WP_318210392.1 DUF6458 family protein -
  N5875_RS01565 - 357420..358565 (+) 1146 WP_318210393.1 mechanosensitive ion channel domain-containing protein -
  N5875_RS01570 - 358598..360118 (-) 1521 WP_318210394.1 catalase -
  N5875_RS01575 cytR 360411..361460 (-) 1050 WP_338491382.1 LacI family DNA-binding transcriptional regulator Regulator
  N5875_RS01580 - 361613..362920 (+) 1308 WP_318210396.1 extracellular solute-binding protein -
  N5875_RS01585 - 362938..363885 (+) 948 WP_318210397.1 sugar ABC transporter permease -
  N5875_RS01590 - 363885..364715 (+) 831 WP_318210398.1 carbohydrate ABC transporter permease -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 37857.35 Da        Isoelectric Point: 6.5928

>NTDB_id=630944 N5875_RS01575 WP_338491382.1 360411..361460(-) (cytR) [Streptomyces sp. SJL17-4]
MRDGEESRRITLAEVAQQAGVSLSTVSKVLNGRQDVSSATRVKVERLLDAHAYRRTTRVAREAPLIELVFHELDSVWSME
LIRGVENLAKAHRASVVLTESGTRHAPAPDWIEGVLQRRPIGVVLVFSSLPDAVKRQLGARSIPFVIVDPAGDPEPDVPS
VGSANWTGGVAATRHLIDLGHRRIGIITGPEDMLCSLARLDGYRSALNMAGLTHDPSLVRFGDFHVEGGYAWAMELLRLP
DRPTAVFAGSDLQALGVMEAARVCGLRVPEDLSVVGYDDVMIARWSSPPLTTIHQPLREMGEEAVQMLLRLRAGEPSVTR
MELTTSLVVRKSTAPPPARVQAGGADTAE

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=630944 N5875_RS01575 WP_338491382.1 360411..361460(-) (cytR) [Streptomyces sp. SJL17-4]
ATGCGAGATGGCGAGGAGAGCAGGCGAATCACGCTGGCGGAAGTAGCGCAGCAGGCCGGGGTGTCACTTTCGACAGTTTC
GAAAGTTCTCAACGGCCGGCAGGACGTTTCGTCGGCCACCCGCGTCAAGGTCGAGCGGCTCCTCGACGCGCACGCGTACC
GACGGACCACCCGCGTCGCCAGGGAGGCGCCCCTCATCGAACTCGTCTTCCACGAGCTCGACAGCGTCTGGTCGATGGAG
CTGATCCGCGGGGTGGAGAACCTCGCCAAGGCTCACCGGGCGAGCGTCGTGCTGACCGAGAGCGGCACCCGGCACGCCCC
GGCGCCGGACTGGATCGAAGGAGTGCTGCAGCGCCGGCCGATCGGCGTGGTCCTGGTGTTCTCCTCCCTCCCCGACGCCG
TCAAGCGACAGCTCGGCGCGCGGTCGATCCCCTTCGTGATCGTCGACCCGGCGGGGGACCCCGAACCCGACGTGCCGTCC
GTCGGTTCGGCGAACTGGACCGGCGGCGTCGCCGCGACCCGCCACCTCATCGACCTCGGGCACCGTCGCATCGGCATCAT
CACCGGCCCCGAGGACATGCTGTGTTCCCTGGCCCGGCTCGACGGCTACCGGTCCGCGCTGAACATGGCCGGCCTCACGC
ACGACCCCTCCCTCGTCCGGTTCGGCGACTTCCACGTCGAGGGCGGCTACGCGTGGGCCATGGAGCTGTTGCGGCTGCCG
GACCGACCCACCGCCGTCTTCGCCGGAAGCGATCTGCAGGCGCTCGGCGTCATGGAGGCGGCCCGGGTCTGCGGGCTGCG
CGTGCCCGAGGACCTGTCCGTCGTCGGATACGACGACGTGATGATCGCGCGCTGGTCGAGCCCCCCGCTCACCACGATCC
ACCAGCCGCTGCGCGAGATGGGCGAGGAGGCGGTGCAGATGCTGCTCCGCCTGCGAGCCGGGGAGCCCTCGGTGACCCGC
ATGGAGCTCACGACCAGCCTCGTCGTCAGGAAGAGCACCGCCCCACCACCCGCGCGCGTCCAGGCGGGTGGCGCGGACAC
CGCGGAGTAG

Domains

Predicted by InterProScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(173-333)

Bacterial regulatory proteins, lacI family (LacI)

(11-54)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

37.798

96.275

0.364