Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   LPH50_RS00425 Genome accession   NZ_CP087689
Coordinates   87826..88242 (-) Length   138 a.a.
NCBI ID   WP_038271642.1    Uniprot ID   Z9JH75
Organism   Xylella taiwanensis strain PLS415     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 82826..93242
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPH50_RS00415 (LPH50_00415) - 85197..87239 (-) 2043 WP_038271594.1 methyl-accepting chemotaxis protein -
  LPH50_RS00420 (LPH50_00420) - 87279..87809 (-) 531 WP_038271592.1 chemotaxis protein CheW -
  LPH50_RS00425 (LPH50_00425) pilG 87826..88242 (-) 417 WP_038271642.1 response regulator Regulator
  LPH50_RS00430 (LPH50_00430) gshB 88512..89456 (+) 945 WP_038271589.1 glutathione synthase -
  LPH50_RS00435 (LPH50_00435) - 89458..90333 (+) 876 WP_038271586.1 energy transducer TonB -
  LPH50_RS00440 (LPH50_00440) - 90717..91526 (+) 810 WP_038271584.1 DUF6216 family protein -

Sequence

Protein


Download         Length: 138 a.a.        Molecular weight: 15359.98 Da        Isoelectric Point: 9.5200

>NTDB_id=630913 LPH50_RS00425 WP_038271642.1 87826..88242(-) (pilG) [Xylella taiwanensis strain PLS415]
MIDNVAGGKEFAGLRVMVIDDSKTIRRTAETLLKREGCEVVTATDGFEALAKIADQKSQIIFVDIMMPRLDGYQTCALIK
NNTLFKSTPVIMLSSKDGLFDKARGRVVGSEQYLTKPFTREELLSAIRRYVTPLKLAV

Nucleotide


Download         Length: 417 bp        

>NTDB_id=630913 LPH50_RS00425 WP_038271642.1 87826..88242(-) (pilG) [Xylella taiwanensis strain PLS415]
ATGATTGACAATGTTGCTGGTGGCAAGGAATTCGCAGGTCTTAGGGTGATGGTCATCGACGACTCGAAAACCATAAGGCG
TACTGCCGAAACACTGCTCAAGCGTGAGGGGTGCGAGGTGGTTACCGCTACTGATGGCTTTGAAGCCTTAGCAAAAATTG
CTGACCAGAAGTCGCAGATTATTTTTGTCGATATTATGATGCCGCGTCTGGATGGTTATCAAACCTGCGCGTTGATCAAG
AACAATACCTTGTTTAAGTCGACGCCCGTGATCATGCTTTCTTCTAAAGATGGCCTATTCGATAAGGCGCGTGGCCGTGT
GGTCGGTTCCGAACAATATCTGACCAAACCTTTTACACGCGAGGAATTGTTAAGTGCGATTCGTAGATATGTTACCCCTT
TGAAATTAGCTGTTTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(16-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Z9JH75

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

74.59

88.406

0.659