Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   N4T05_RS07215 Genome accession   NZ_CP104559
Coordinates   1508284..1508910 (+) Length   208 a.a.
NCBI ID   WP_103215296.1    Uniprot ID   -
Organism   Staphylococcus aureus strain SA2107     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1503284..1513910
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N4T05_RS07185 (N4T05_07185) - 1504269..1504601 (-) 333 WP_000516800.1 DUF4889 domain-containing protein -
  N4T05_RS07190 (N4T05_07190) - 1504685..1505830 (-) 1146 WP_000487165.1 class I SAM-dependent RNA methyltransferase -
  N4T05_RS07200 (N4T05_07200) gpsB 1506481..1506825 (-) 345 WP_001286320.1 cell division regulator GpsB -
  N4T05_RS07205 (N4T05_07205) - 1506839..1507402 (-) 564 WP_000241311.1 DUF1273 domain-containing protein -
  N4T05_RS07210 (N4T05_07210) - 1507395..1507745 (-) 351 WP_001000808.1 YppE family protein -
  N4T05_RS07215 (N4T05_07215) recU 1508284..1508910 (+) 627 WP_103215296.1 Holliday junction resolvase RecU Machinery gene
  N4T05_RS07220 (N4T05_07220) - 1508907..1511090 (+) 2184 WP_000138360.1 transglycosylase domain-containing protein -
  N4T05_RS07225 (N4T05_07225) - 1511607..1511948 (-) 342 WP_000182030.1 YpoC family protein -
  N4T05_RS07230 (N4T05_07230) nth 1511953..1512612 (-) 660 WP_000253765.1 endonuclease III -
  N4T05_RS07235 (N4T05_07235) - 1512602..1513288 (-) 687 WP_000362215.1 DnaD domain-containing protein -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 24454.84 Da        Isoelectric Point: 9.7084

>NTDB_id=630896 N4T05_RS07215 WP_103215296.1 1508284..1508910(+) (recU) [Staphylococcus aureus strain SA2107]
MNYPNGKPYRKNSAIDGGKKTAAFSNIEYGGRGMSLEKDIEHSNAFYLKNDIAVIHKKPTPVQIVNVNYPKRSKAVINEA
YFRTPSTTDYNGVYQGYYIDFEAKETKNKTSFPLNNIHDHQVEHMKNAYQQKGIVFLMIRFKTLDEVYLLPYSKFEIFWK
RYKDNIKKSITVDEIRKNGYHIPYQYQPRLDYLKAVDKLILDESEDRV

Nucleotide


Download         Length: 627 bp        

>NTDB_id=630896 N4T05_RS07215 WP_103215296.1 1508284..1508910(+) (recU) [Staphylococcus aureus strain SA2107]
ATGAATTATCCAAATGGTAAACCATATCGTAAAAATAGTGCTATAGACGGAGGGAAAAAGACCGCTGCCTTTAGTAATAT
TGAGTATGGTGGACGTGGTATGTCACTTGAAAAAGATATCGAACATTCAAATGCGTTTTATCTTAAAAACGACATTGCAG
TTATTCACAAAAAGCCTACGCCAGTACAAATAGTTAATGTCAACTATCCTAAACGGAGTAAAGCTGTGATTAACGAAGCT
TATTTTCGTACACCTTCAACAACTGATTACAATGGCGTTTATCAAGGTTATTATATTGATTTTGAAGCAAAGGAAACTAA
AAACAAGACGTCCTTTCCTTTAAATAATATTCATGACCATCAAGTCGAACATATGAAAAATGCATATCAACAAAAAGGTA
TTGTGTTTTTAATGATTCGTTTTAAAACGCTAGATGAAGTTTATCTTTTACCCTATTCAAAATTCGAAATATTTTGGAAG
AGGTATAAAGATAATATTAAAAAGTCTATAACAGTTGATGAAATACGAAAAAATGGTTACCATATTCCTTATCAGTATCA
ACCAAGATTAGACTATCTAAAAGCAGTTGATAAGTTGATATTAGATGAAAGTGAGGACCGCGTATGA

Domains

Predicted by InterProScan.

Recombination protein U (RecU)

(32-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

53.623

99.519

0.534