Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   LO755_RS27390 Genome accession   NZ_CP087673
Coordinates   5764568..5765125 (+) Length   185 a.a.
NCBI ID   WP_003094697.1    Uniprot ID   A0A6N0KGD7
Organism   Pseudomonas aeruginosa strain P96131     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5759568..5770125
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LO755_RS27370 (LO755_27370) pilR 5760844..5762181 (+) 1338 WP_003094694.1 two-component system response regulator PilR Regulator
  LO755_RS27375 (LO755_27375) thiO 5762227..5763321 (-) 1095 WP_003094695.1 glycine oxidase ThiO -
  LO755_RS27380 (LO755_27380) - 5763456..5763965 (+) 510 WP_015503652.1 GspH/FimT family pseudopilin -
  LO755_RS27385 (LO755_27385) - 5764071..5764577 (+) 507 WP_003094696.1 GspH/FimT family pseudopilin -
  LO755_RS27390 (LO755_27390) pilV 5764568..5765125 (+) 558 WP_003094697.1 type 4a pilus minor pilin PilV Machinery gene
  LO755_RS27395 (LO755_27395) pilW 5765122..5765946 (+) 825 WP_003094698.1 type 4a pilus minor pilin PilW -
  LO755_RS27400 (LO755_27400) pilX 5765943..5766530 (+) 588 WP_003094700.1 type 4a pilus minor pilin PilX -
  LO755_RS27405 (LO755_27405) pilY1 5766542..5770033 (+) 3492 WP_003094704.1 type 4a pilus biogenesis protein PilY1 -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20069.21 Da        Isoelectric Point: 8.2164

>NTDB_id=630698 LO755_RS27390 WP_003094697.1 5764568..5765125(+) (pilV) [Pseudomonas aeruginosa strain P96131]
MLLKSRHKPLYQSGFSMIEVLVALLLISIGVLGMIAMQGKTIQYTADSVERNKAAMLGSNLLESMRASPKALYDVKDQMA
TQSDFFKAKGSAFPTAPSSCTPLPDAIKDRLGCWAEQVKNELPGAGDLLKSDYYICRSSKPGDCDGKGSMLEIRLAWRGK
QGACVNAADSSADTSLCYYTLRVEP

Nucleotide


Download         Length: 558 bp        

>NTDB_id=630698 LO755_RS27390 WP_003094697.1 5764568..5765125(+) (pilV) [Pseudomonas aeruginosa strain P96131]
ATGCTATTGAAATCGCGGCACAAGCCGCTGTACCAATCCGGCTTCAGCATGATCGAAGTGCTGGTCGCCCTGCTGCTGAT
CAGCATCGGCGTGCTGGGCATGATCGCCATGCAGGGCAAGACCATCCAGTACACCGCCGACTCGGTCGAGCGCAACAAGG
CAGCCATGCTCGGCAGCAACCTGCTGGAAAGCATGCGGGCGAGCCCGAAGGCGCTGTACGACGTCAAGGACCAGATGGCC
ACGCAATCCGACTTCTTCAAGGCCAAGGGGTCGGCGTTCCCCACCGCGCCGTCCTCCTGCACGCCATTGCCCGACGCGAT
CAAGGACCGCCTGGGATGCTGGGCGGAACAGGTGAAGAACGAACTGCCAGGCGCTGGCGACCTGCTGAAGAGCGACTACT
ACATCTGCCGCAGCTCGAAGCCGGGCGACTGCGACGGCAAGGGCTCCATGCTGGAAATCCGCCTGGCCTGGCGCGGCAAG
CAAGGCGCCTGCGTCAACGCCGCCGACAGCAGCGCCGACACCTCCCTCTGCTACTACACCCTCAGGGTCGAGCCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(12-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6N0KGD7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

97.838

100

0.978