Detailed information    

insolico Bioinformatically predicted

Overview


Name   fimV   Type   Machinery gene
Locus tag   LO755_RS09655 Genome accession   NZ_CP087673
Coordinates   2054019..2056793 (+) Length   924 a.a.
NCBI ID   WP_023098502.1    Uniprot ID   A0AAQ3LPW4
Organism   Pseudomonas aeruginosa strain P96131     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Related MGE


Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 2054019..2097968 2054019..2056793 within 0


Gene organization within MGE regions


Location: 2054019..2097968
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LO755_RS09655 (LO755_09655) fimV 2054019..2056793 (+) 2775 WP_023098502.1 motility hub landmark protein FimV Machinery gene
  LO755_RS09660 (LO755_09660) - 2056941..2057990 (-) 1050 WP_230444907.1 tyrosine-type recombinase/integrase -
  LO755_RS09665 (LO755_09665) - 2057990..2058232 (-) 243 WP_033977731.1 DUF4224 domain-containing protein -
  LO755_RS09670 (LO755_09670) - 2058216..2058572 (-) 357 WP_043152884.1 hypothetical protein -
  LO755_RS09675 (LO755_09675) - 2058577..2059266 (-) 690 WP_043152887.1 hypothetical protein -
  LO755_RS09680 (LO755_09680) - 2059439..2059630 (-) 192 WP_003129607.1 hypothetical protein -
  LO755_RS09685 (LO755_09685) - 2059743..2060270 (-) 528 WP_052158099.1 hypothetical protein -
  LO755_RS09690 (LO755_09690) - 2060267..2061172 (-) 906 WP_191970317.1 hypothetical protein -
  LO755_RS09695 (LO755_09695) - 2061169..2061504 (-) 336 WP_015648187.1 hypothetical protein -
  LO755_RS09700 (LO755_09700) - 2061507..2061737 (-) 231 WP_058181396.1 Arc family DNA-binding protein -
  LO755_RS09705 (LO755_09705) - 2061812..2062603 (-) 792 WP_042855373.1 Bro-N domain-containing protein -
  LO755_RS09710 (LO755_09710) - 2062833..2063066 (-) 234 WP_021205288.1 hypothetical protein -
  LO755_RS09715 (LO755_09715) - 2063069..2063455 (-) 387 WP_003085698.1 response regulator transcription factor -
  LO755_RS33435 - 2063756..2063992 (-) 237 WP_071559829.1 type II toxin-antitoxin system HicA family toxin -
  LO755_RS09725 (LO755_09725) - 2064002..2064325 (-) 324 WP_023117101.1 type II toxin-antitoxin system HicB family antitoxin -
  LO755_RS09730 (LO755_09730) - 2064593..2065378 (-) 786 WP_230444908.1 S24 family peptidase -
  LO755_RS09735 (LO755_09735) - 2065467..2065805 (+) 339 WP_023465045.1 hypothetical protein -
  LO755_RS09740 (LO755_09740) - 2065802..2066194 (+) 393 WP_023110578.1 hypothetical protein -
  LO755_RS09745 (LO755_09745) - 2066500..2066817 (+) 318 WP_010791993.1 hypothetical protein -
  LO755_RS09750 (LO755_09750) - 2066814..2067086 (+) 273 WP_023093231.1 hypothetical protein -
  LO755_RS09755 (LO755_09755) - 2067083..2067391 (+) 309 WP_230444909.1 hypothetical protein -
  LO755_RS09760 (LO755_09760) - 2067400..2067666 (+) 267 WP_225063470.1 hypothetical protein -
  LO755_RS09765 (LO755_09765) - 2067659..2067916 (+) 258 WP_230444910.1 hypothetical protein -
  LO755_RS09770 (LO755_09770) - 2067913..2068677 (+) 765 WP_003119037.1 hypothetical protein -
  LO755_RS09775 (LO755_09775) - 2068674..2069030 (+) 357 WP_023093236.1 hypothetical protein -
  LO755_RS33270 - 2069034..2069168 (+) 135 WP_258529992.1 hypothetical protein -
  LO755_RS09780 (LO755_09780) - 2069165..2069482 (+) 318 WP_033977464.1 hypothetical protein -
  LO755_RS09785 (LO755_09785) - 2069479..2069904 (+) 426 WP_033977466.1 hypothetical protein -
  LO755_RS09790 (LO755_09790) - 2069901..2071019 (+) 1119 WP_033977468.1 DUF1376 domain-containing protein -
  LO755_RS09795 (LO755_09795) - 2071013..2072824 (+) 1812 WP_023093240.1 DnaB-like helicase C-terminal domain-containing protein -
  LO755_RS09800 (LO755_09800) - 2072821..2073105 (+) 285 WP_230444911.1 hypothetical protein -
  LO755_RS09805 (LO755_09805) - 2073102..2073659 (+) 558 WP_003085729.1 hypothetical protein -
  LO755_RS09810 (LO755_09810) - 2074082..2074510 (-) 429 WP_034014229.1 type II toxin-antitoxin system HicB family antitoxin -
  LO755_RS09815 (LO755_09815) - 2074557..2074739 (-) 183 WP_003098540.1 type II toxin-antitoxin system HicA family toxin -
  LO755_RS09820 (LO755_09820) - 2074939..2075271 (+) 333 WP_003129668.1 phage holin, lambda family -
  LO755_RS09825 (LO755_09825) - 2075268..2075885 (+) 618 WP_230444912.1 glycoside hydrolase family 19 protein -
  LO755_RS09830 (LO755_09830) - 2075885..2076355 (+) 471 WP_329958950.1 lysis system i-spanin subunit Rz -
  LO755_RS09835 (LO755_09835) - 2076352..2077095 (+) 744 WP_073673209.1 hypothetical protein -
  LO755_RS09840 (LO755_09840) - 2077227..2077754 (+) 528 WP_023117090.1 terminase small subunit -
  LO755_RS09845 (LO755_09845) - 2077726..2079681 (+) 1956 WP_229038204.1 phage terminase large subunit family protein -
  LO755_RS09850 (LO755_09850) - 2079681..2079884 (+) 204 WP_023099057.1 phage head-tail joining protein -
  LO755_RS09855 (LO755_09855) - 2079886..2081412 (+) 1527 WP_070410937.1 phage portal protein -
  LO755_RS09860 (LO755_09860) - 2081396..2083375 (+) 1980 WP_230444914.1 prohead protease/major capsid protein fusion protein -
  LO755_RS09865 (LO755_09865) - 2083447..2083809 (+) 363 WP_033971897.1 DUF2190 family protein -
  LO755_RS09870 (LO755_09870) - 2083814..2084134 (+) 321 WP_171889892.1 head-tail joining protein -
  LO755_RS09875 (LO755_09875) - 2084128..2084601 (+) 474 WP_371320423.1 hypothetical protein -
  LO755_RS09880 (LO755_09880) - 2084605..2084799 (+) 195 WP_015980908.1 DUF7210 family protein -
  LO755_RS09885 (LO755_09885) - 2084801..2085553 (+) 753 WP_034059280.1 hypothetical protein -
  LO755_RS09890 (LO755_09890) - 2085698..2086225 (+) 528 WP_071534551.1 DUF4124 domain-containing protein -
  LO755_RS09895 (LO755_09895) - 2086283..2086585 (+) 303 WP_023083800.1 hypothetical protein -
  LO755_RS09900 (LO755_09900) - 2086688..2089774 (+) 3087 WP_079381832.1 tape measure protein -
  LO755_RS09905 (LO755_09905) - 2089814..2090335 (+) 522 WP_043096401.1 hypothetical protein -
  LO755_RS09910 (LO755_09910) - 2090335..2092032 (+) 1698 WP_230444915.1 hypothetical protein -
  LO755_RS09915 (LO755_09915) - 2092035..2092445 (+) 411 WP_230444916.1 hypothetical protein -
  LO755_RS09920 (LO755_09920) - 2092445..2092990 (+) 546 WP_034006700.1 hypothetical protein -
  LO755_RS09925 (LO755_09925) - 2093003..2093407 (+) 405 WP_031641872.1 hypothetical protein -
  LO755_RS09930 (LO755_09930) - 2093404..2095062 (+) 1659 WP_230444917.1 hypothetical protein -
  LO755_RS09935 (LO755_09935) - 2095092..2095679 (+) 588 WP_023124270.1 hypothetical protein -
  LO755_RS09940 (LO755_09940) - 2095672..2095863 (+) 192 WP_003159486.1 hypothetical protein -
  LO755_RS09945 (LO755_09945) - 2095868..2096428 (+) 561 WP_230444918.1 hypothetical protein -
  LO755_RS09950 (LO755_09950) - 2096429..2096710 (+) 282 WP_023103825.1 hypothetical protein -
  LO755_RS09955 (LO755_09955) - 2096703..2097266 (+) 564 WP_031640388.1 hypothetical protein -
  LO755_RS09960 (LO755_09960) - 2097266..2097568 (+) 303 WP_023103826.1 hypothetical protein -
  LO755_RS09965 (LO755_09965) - 2097565..2097807 (+) 243 WP_230444919.1 hypothetical protein -

Sequence


Protein


Download         Length: 924 a.a.        Molecular weight: 97243.47 Da        Isoelectric Point: 3.9481

>NTDB_id=630683 LO755_RS09655 WP_023098502.1 2054019..2056793(+) (fimV) [Pseudomonas aeruginosa strain P96131]
MVRLRTLVRAIAAASVLTSGMAHGLGLGEITLKSALNQPLDAEIELLEVRDLGSGEVIPSLASPEEFSKAGVDRLYYLTD
LKFTPVVKPNGKSVIRVTSSKPVQEPYLNFLVQVLWPNGRLLREYTVLLDPPLYSPQAAASAPQAPVSAPRATGAPRAPQ
APAPVRTTAPAGSDTYRTVSNDTLWEIAQRNRTDRVSVPQAMLAFQELNPGAFVDGNINRLKSGQVLRIPTEQQMLERSP
REALSQVQAQNQSWRGSRNPAAGSAGARQLDATQRNAAGSAPSKVDATDNLRLVSGEGKASKGADKGGKGDSKALADTLA
VTKESLDSTRRENEELQSRMQDLQSQLDKLQKLIQLKDAQLAKLQGQLGAEGQGAAQPNAALPDASQPNAAAQAPAQPGT
PAAAAPTPAPAGEAPAAPAQPPVAPPPAPAAEKPPAPAVPAPAPVQAAEQPAPSFLDELLANPLWLAVIGGSALLALLVL
LMILSRRNAQKEKEEAQAFAADAGEEQEDALDLGKDGFDDLTLDEPEPQVAAAAPQVEKTTAQTSDALGEADIYIAYGRF
NQAAELLQNAIYDEPQRTDLRLKLMEVYAEMGDREGFARQENELREIGGAQPQVEQLKSRYPAMVAVAAVAGLAGAKLAQ
DELDSFSLDDLSLDDSGHAAKPDAAGQDLDDAFDLSLDDLGGGDLGSDDVQADLKSDSGALDDLTLDSDLDLAASTAADK
PVDDLDFGLDFAELAETPSQPKHDDLGDFSLNLDAPEDKLSDDDFLLSLNDEVPAAAPADNEFTLDTEAAEEPALSLPDD
FDLSLADEPTEPAAPEKGEDSFAAQLDEVSAQLDELASNLDEPKSAAPSFSAEDAAVASALDGDADDDFDFLSGADEAAT
KLDLARAYIDMGDSEGARDILDEVLAEGNDSQQAEARELLERLA

Nucleotide


Download         Length: 2775 bp        

>NTDB_id=630683 LO755_RS09655 WP_023098502.1 2054019..2056793(+) (fimV) [Pseudomonas aeruginosa strain P96131]
ATGGTTCGGCTTCGTACACTGGTTCGGGCAATCGCGGCGGCCTCGGTCCTGACTTCCGGCATGGCGCATGGATTGGGACT
GGGGGAAATCACCCTGAAGTCGGCGTTGAACCAACCGTTGGATGCCGAGATCGAGCTGCTCGAAGTTCGTGACCTGGGTT
CGGGCGAGGTGATCCCGAGCCTGGCGTCGCCGGAAGAGTTCAGCAAGGCGGGCGTCGATCGCCTGTACTACCTCACCGAC
CTGAAGTTCACGCCGGTGGTGAAGCCCAACGGCAAGAGCGTCATTCGCGTGACCTCGTCGAAGCCGGTGCAGGAGCCCTA
CCTGAACTTCCTGGTCCAGGTGCTCTGGCCGAACGGCCGCCTGCTGCGCGAGTACACCGTCCTGCTGGATCCGCCGCTGT
ACTCCCCGCAGGCCGCGGCAAGCGCTCCGCAAGCGCCGGTCAGCGCGCCGCGCGCGACCGGCGCCCCGCGAGCCCCGCAG
GCTCCGGCTCCGGTGCGTACCACCGCGCCGGCAGGCAGCGACACCTATCGCACCGTTTCCAACGACACGCTCTGGGAGAT
CGCCCAGCGCAACCGTACCGATCGCGTTTCCGTACCCCAGGCGATGCTCGCGTTCCAGGAACTGAATCCGGGCGCCTTCG
TCGATGGCAACATCAACCGGCTGAAGAGCGGCCAGGTCCTGCGCATTCCCACCGAACAGCAGATGCTGGAGCGCTCGCCG
CGCGAGGCGCTGTCCCAGGTGCAGGCGCAGAACCAGAGCTGGCGCGGCAGCCGCAATCCGGCCGCGGGCAGCGCTGGCGC
CAGGCAGTTGGATGCGACCCAGCGCAATGCCGCCGGGTCGGCGCCATCCAAGGTCGACGCCACGGACAACCTGCGCCTGG
TGTCTGGCGAGGGCAAGGCCAGCAAGGGTGCCGACAAGGGCGGGAAGGGCGACAGCAAGGCGCTCGCCGATACCCTGGCG
GTGACCAAGGAAAGCCTCGATAGCACTCGCCGCGAGAACGAAGAACTGCAGAGCCGCATGCAGGATCTGCAGAGCCAGCT
GGACAAGCTGCAGAAGTTGATCCAGTTGAAGGACGCCCAGTTGGCCAAGCTGCAAGGGCAGTTGGGCGCCGAAGGCCAGG
GCGCAGCCCAGCCGAACGCAGCCCTGCCGGATGCGTCCCAGCCCAATGCAGCCGCGCAGGCGCCGGCTCAGCCCGGGACT
CCCGCTGCGGCAGCGCCGACTCCTGCTCCGGCCGGAGAAGCACCCGCCGCTCCGGCGCAGCCTCCGGTGGCGCCGCCGCC
CGCGCCAGCTGCCGAGAAGCCTCCGGCACCTGCCGTTCCGGCGCCCGCTCCGGTACAGGCGGCAGAACAGCCGGCACCGA
GCTTCCTCGACGAACTGCTGGCCAACCCGCTGTGGTTGGCGGTGATCGGCGGTAGCGCACTGCTGGCGTTGCTGGTGCTG
CTGATGATCCTGTCGCGGCGCAATGCGCAGAAAGAGAAGGAAGAAGCCCAGGCTTTCGCCGCGGATGCCGGCGAGGAACA
GGAGGATGCGCTGGACCTGGGAAAGGACGGCTTCGACGACCTGACCCTCGACGAGCCTGAACCGCAGGTCGCAGCCGCTG
CGCCGCAGGTCGAGAAGACCACTGCGCAGACTTCCGATGCGCTGGGCGAGGCCGACATCTATATCGCCTACGGGCGTTTC
AACCAGGCCGCCGAACTGTTGCAGAACGCCATCTACGACGAGCCGCAGCGCACCGACCTGCGCCTCAAGCTGATGGAAGT
CTATGCCGAGATGGGCGATCGCGAAGGTTTCGCTCGCCAGGAAAACGAGCTGCGCGAAATCGGCGGCGCACAGCCGCAGG
TCGAGCAGCTCAAGTCGCGCTACCCGGCAATGGTCGCGGTCGCCGCGGTTGCCGGCCTGGCCGGCGCCAAGCTGGCGCAG
GACGAGCTGGATAGTTTCAGCCTCGACGACCTGTCGCTCGACGACAGCGGTCACGCGGCCAAGCCGGATGCGGCAGGACA
GGATCTCGACGACGCCTTCGACCTGAGCCTGGACGACCTGGGCGGCGGCGATCTTGGCAGCGACGACGTGCAGGCCGACC
TCAAGTCCGACAGCGGGGCGCTGGACGACCTGACCCTGGACAGCGATCTGGACCTGGCGGCCTCGACCGCGGCGGACAAG
CCTGTCGACGATCTCGACTTCGGCCTGGATTTCGCGGAATTGGCAGAGACTCCGAGCCAACCCAAGCATGACGACCTGGG
CGATTTCTCCCTGAATCTCGATGCGCCGGAAGACAAGCTTTCGGACGACGACTTCCTGCTTTCGCTGAACGACGAGGTGC
CCGCCGCGGCGCCAGCCGACAACGAATTCACCCTCGATACCGAGGCTGCCGAAGAGCCGGCGTTGTCCCTGCCGGACGAC
TTCGACCTGTCGCTGGCCGACGAGCCGACGGAGCCGGCCGCTCCGGAGAAGGGCGAGGACAGTTTCGCCGCCCAGTTGGA
CGAGGTGAGTGCGCAGTTGGACGAGTTGGCCAGCAACCTTGACGAGCCGAAGAGCGCGGCGCCGAGTTTCTCCGCCGAGG
ATGCAGCGGTCGCCTCCGCCCTGGACGGAGACGCCGACGATGACTTCGACTTCCTCTCCGGTGCCGACGAAGCGGCGACC
AAGCTGGATCTGGCTCGCGCCTATATCGACATGGGCGATAGCGAAGGCGCGCGCGATATCCTCGACGAAGTCCTGGCCGA
AGGTAACGACAGCCAGCAGGCGGAAGCCCGCGAGTTGCTGGAGCGCCTGGCCTGA

Domains



No domain identified.



Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimV Pseudomonas aeruginosa PAK

98.701

100

0.987