Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   N5O72_RS22420 Genome accession   NZ_CP104536
Coordinates   4638682..4639674 (-) Length   330 a.a.
NCBI ID   WP_000224461.1    Uniprot ID   -
Organism   Escherichia coli strain E3     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 4633682..4644674
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N5O72_RS22410 (N5O72_22410) yieP 4636574..4637266 (+) 693 WP_001131169.1 FadR/GntR family transcriptional regulator -
  N5O72_RS22415 (N5O72_22415) mdtD 4637289..4638716 (+) 1428 WP_001280887.1 multidrug transporter subunit MdtD -
  N5O72_RS22420 (N5O72_22420) cytR 4638682..4639674 (-) 993 WP_000224461.1 ribose operon transcriptional repressor RbsR Regulator
  N5O72_RS22425 (N5O72_22425) rbsK 4639678..4640607 (-) 930 WP_001300603.1 ribokinase -
  N5O72_RS22430 (N5O72_22430) rbsB 4640733..4641623 (-) 891 WP_001056273.1 ribose ABC transporter substrate-binding protein RbsB -
  N5O72_RS22435 (N5O72_22435) rbsC 4641648..4642613 (-) 966 WP_000211858.1 ribose ABC transporter permease -
  N5O72_RS22440 (N5O72_22440) rbsA 4642618..4644123 (-) 1506 WP_000387756.1 ribose ABC transporter ATP-binding protein RbsA -
  N5O72_RS22445 (N5O72_22445) rbsD 4644131..4644550 (-) 420 WP_001364631.1 D-ribose pyranase -

Sequence

Protein


Download         Length: 330 a.a.        Molecular weight: 36541.85 Da        Isoelectric Point: 5.0626

>NTDB_id=630632 N5O72_RS22420 WP_000224461.1 4638682..4639674(-) (cytR) [Escherichia coli strain E3]
MATMKDVARLAGVSTSTVSHVINKDRFVSEAITAKVEAAIKELNYAPSALARSLKLNQTHTIGMLITASTNPFYSELVRG
VERSCFERGYSLVLCNTEGDEQRMNRNLETLMQKRVDGLLLLCTETHQPSREIMQRYPTVPTVMMDWAPFDGDSDLIQDN
SLLGGDLATQYLIDKGHTRIACITGPLDKTPALLRLEGYRAAMKRAGLSIPDGYEVTGDFEFNGGFDAMRQLLSHPLRPQ
AVFTGNDAMAVGVYQALYQAELQVPQDIAVIGYDDIELASFMTPPLTTIHQPKDELGELAIDVLIHRITQPTLQQQRLQL
TPILMERGSA

Nucleotide


Download         Length: 993 bp        

>NTDB_id=630632 N5O72_RS22420 WP_000224461.1 4638682..4639674(-) (cytR) [Escherichia coli strain E3]
TTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTACCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTT
CGTCAGTGAAGCGATTACCGCCAAAGTTGAAGCGGCGATTAAAGAACTCAATTACGCGCCATCAGCCCTGGCGCGTAGCC
TCAAACTCAATCAAACACATACCATTGGCATGTTGATCACTGCCAGTACCAATCCTTTCTATTCAGAACTGGTGCGTGGC
GTTGAACGCAGCTGCTTCGAACGCGGTTATAGTCTCGTCCTTTGCAATACCGAAGGCGATGAACAGCGGATGAATCGCAA
TCTGGAAACGCTGATGCAAAAACGCGTTGATGGCTTGCTGTTACTGTGCACCGAAACGCATCAACCTTCGCGTGAAATCA
TGCAACGTTATCCGACAGTGCCTACTGTGATGATGGACTGGGCTCCGTTCGATGGCGACAGCGATCTTATTCAGGATAAC
TCGTTGCTGGGCGGAGACTTAGCAACGCAATATCTGATCGATAAAGGTCATACCCGTATCGCCTGTATTACCGGTCCGCT
GGATAAAACTCCGGCGCTCCTGCGGTTGGAAGGTTATCGGGCGGCGATGAAACGTGCGGGTCTCAGCATTCCTGATGGCT
ATGAAGTCACTGGTGATTTTGAATTTAACGGCGGGTTTGACGCCATGCGCCAACTGTTATCACATCCGCTGCGTCCTCAG
GCCGTCTTTACCGGAAATGACGCTATGGCTGTTGGCGTTTACCAGGCGTTATATCAGGCAGAGTTACAGGTTCCGCAGGA
TATCGCGGTGATTGGCTATGACGATATCGAACTGGCAAGCTTTATGACGCCACCATTAACCACTATCCACCAACCGAAAG
ATGAACTGGGGGAGCTGGCGATTGATGTACTCATCCATCGGATAACCCAGCCGACCCTTCAGCAACAACGATTACAACTT
ACTCCGATTCTGATGGAACGCGGTTCGGCTTAG

Domains

Predicted by InterProScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(169-329)

Bacterial regulatory proteins, lacI family (LacI)

(3-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

37.349

100

0.376
  cytR Vibrio cholerae C6706

39.088

93.03

0.364