Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   LOZ89_RS01295 Genome accession   NZ_CP087594
Coordinates   277289..277615 (+) Length   108 a.a.
NCBI ID   WP_000801427.1    Uniprot ID   N9J3X5
Organism   Acinetobacter baumannii strain SHOU-Ab01     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 272289..282615
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOZ89_RS01270 (LOZ89_01270) hemC 272906..273823 (+) 918 WP_002159654.1 hydroxymethylbilane synthase -
  LOZ89_RS01275 (LOZ89_01275) - 273828..274595 (+) 768 WP_000897410.1 uroporphyrinogen-III synthase -
  LOZ89_RS01280 (LOZ89_01280) - 274604..275443 (+) 840 WP_005129863.1 hypothetical protein -
  LOZ89_RS01285 (LOZ89_01285) - 275453..276646 (+) 1194 WP_000681777.1 hypothetical protein -
  LOZ89_RS01290 (LOZ89_01290) - 276654..277094 (+) 441 WP_000661569.1 acyl-CoA thioesterase -
  LOZ89_RS01295 (LOZ89_01295) hns 277289..277615 (+) 327 WP_000801427.1 H-NS family nucleoid-associated regulatory protein Regulator
  LOZ89_RS01300 (LOZ89_01300) gspN 277948..278691 (+) 744 WP_005129860.1 type II secretion system protein N -
  LOZ89_RS01305 (LOZ89_01305) - 278691..279527 (+) 837 WP_000870031.1 type II secretion system protein N -
  LOZ89_RS01310 (LOZ89_01310) gspD 279569..281839 (+) 2271 WP_001196432.1 type II secretion system secretin GspD -
  LOZ89_RS01315 (LOZ89_01315) - 281880..282509 (+) 630 WP_004748515.1 FHA domain-containing protein -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12462.12 Da        Isoelectric Point: 5.0524

>NTDB_id=630296 LOZ89_RS01295 WP_000801427.1 277289..277615(+) (hns) [Acinetobacter baumannii strain SHOU-Ab01]
MKPDISELSVEELKRLQEEAEALIASKKDQAIEDAYNQIIEIAENVGFSVEQLLEFGAQKRKKTTRKSVEPRYRNKNNAE
ETWTGRGKQPRWLVAEIEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=630296 LOZ89_RS01295 WP_000801427.1 277289..277615(+) (hns) [Acinetobacter baumannii strain SHOU-Ab01]
ATGAAACCGGATATTAGTGAATTATCTGTTGAAGAGTTAAAACGCTTACAAGAAGAAGCAGAAGCTTTAATTGCAAGCAA
AAAAGATCAAGCAATCGAAGATGCTTATAATCAAATTATCGAAATTGCTGAAAATGTAGGTTTTAGTGTTGAACAGCTTC
TAGAATTTGGCGCTCAAAAACGTAAGAAAACAACACGTAAATCTGTAGAACCACGTTACCGTAACAAAAACAATGCTGAA
GAGACTTGGACTGGTCGCGGTAAACAACCACGTTGGTTAGTTGCTGAAATTGAAAAAGGTGCAAAACTTGAAGATTTCTT
AATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9J3X5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

100

100

1