Detailed information    

insolico Bioinformatically predicted

Overview


Name   tsaP   Type   Machinery gene
Locus tag   LOZ89_RS00790 Genome accession   NZ_CP087594
Coordinates   172325..173479 (-) Length   384 a.a.
NCBI ID   WP_005129904.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain SHOU-Ab01     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 167325..178479
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOZ89_RS00770 (LOZ89_00770) - 168486..169136 (+) 651 WP_109850634.1 TetR/AcrR family transcriptional regulator -
  LOZ89_RS00775 (LOZ89_00775) - 169242..170162 (+) 921 WP_002042168.1 DMT family transporter -
  LOZ89_RS00780 (LOZ89_00780) - 170554..171123 (-) 570 WP_000633612.1 L-threonylcarbamoyladenylate synthase -
  LOZ89_RS00785 (LOZ89_00785) dprA 171174..172304 (-) 1131 WP_031945845.1 DNA-processing protein DprA Machinery gene
  LOZ89_RS00790 (LOZ89_00790) tsaP 172325..173479 (-) 1155 WP_005129904.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  LOZ89_RS00795 (LOZ89_00795) def 173602..174132 (+) 531 WP_001196539.1 peptide deformylase -
  LOZ89_RS00800 (LOZ89_00800) - 174169..174597 (+) 429 WP_000231981.1 DUF2946 family protein -
  LOZ89_RS00805 (LOZ89_00805) - 174670..176784 (+) 2115 WP_030423765.1 TonB-dependent copper receptor -
  LOZ89_RS00810 (LOZ89_00810) - 176838..177044 (+) 207 WP_000182542.1 hypothetical protein -
  LOZ89_RS00815 (LOZ89_00815) - 177113..178327 (-) 1215 WP_005129900.1 oxygenase MpaB family protein -

Sequence


Protein


Download         Length: 384 a.a.        Molecular weight: 42373.31 Da        Isoelectric Point: 8.5841

>NTDB_id=630292 LOZ89_RS00790 WP_005129904.1 172325..173479(-) (tsaP) [Acinetobacter baumannii strain SHOU-Ab01]
MKKVFNGMVNFHALGIKKHLLALALCTGVAIGTIAEVHATSPNHNPPSLKSNAPNVYVVKRGDTLWDISGHFLNKPWRWP
EIWASNQHVKNPHWIYPGDRLLLCSLDGRPLVGKDEGDGCVGIIRRYTGQTTHLQPQVRVEALNNSVPVIPLEHIKQWLE
NSTILPADSITNTPYIVGTADQRVLAGKGQTIYARGQGLINGQRYAVYREGEPYYFTDNKGKKHSLGIELLQVASGVAVS
SEKDITTLELTDSYNAEVRRGDRVMPEEQATLPTLFYPVDAKQVTDGGKIIRVMGSIGRAAKNSVVTLDRGTTQGIQVGQ
VFDITQQGESIRDPKTKEVIQLPGQQIGSLMVFRTFDQLSYAYVLESDLPIKVGSSIQPPQFND

Nucleotide


Download         Length: 1155 bp        

>NTDB_id=630292 LOZ89_RS00790 WP_005129904.1 172325..173479(-) (tsaP) [Acinetobacter baumannii strain SHOU-Ab01]
ATGAAAAAGGTTTTTAACGGCATGGTTAATTTTCATGCCTTGGGGATAAAGAAGCATTTACTTGCTTTGGCGCTCTGTAC
AGGTGTCGCAATCGGTACGATAGCAGAGGTTCATGCAACCAGTCCGAACCATAATCCACCCTCACTTAAAAGTAATGCAC
CCAATGTATATGTTGTAAAACGTGGGGATACTTTATGGGATATTTCAGGACATTTTCTAAATAAACCATGGCGTTGGCCT
GAAATCTGGGCGAGCAACCAACATGTTAAAAATCCACACTGGATCTATCCGGGTGACCGATTACTATTATGTAGCCTAGA
TGGGCGTCCTTTAGTCGGTAAAGATGAGGGCGATGGTTGTGTAGGTATTATTCGCCGCTACACTGGGCAAACCACTCACT
TACAACCTCAAGTTCGCGTCGAAGCATTAAATAATAGTGTTCCGGTTATTCCACTTGAACATATTAAACAGTGGTTAGAG
AACAGTACTATTTTACCAGCCGACTCAATTACCAACACACCTTATATTGTTGGTACAGCCGATCAACGTGTACTTGCAGG
AAAAGGCCAGACTATTTATGCACGAGGACAAGGCTTAATTAATGGGCAGCGTTATGCAGTCTACCGAGAAGGTGAACCTT
ACTATTTCACAGACAATAAAGGTAAAAAGCATAGTTTAGGGATTGAGCTACTACAGGTTGCTTCAGGTGTTGCGGTCTCT
TCTGAAAAAGATATTACTACATTAGAACTAACAGATAGTTATAACGCTGAAGTACGTCGTGGCGATCGTGTTATGCCTGA
AGAACAAGCTACTTTGCCAACATTATTTTACCCAGTAGATGCGAAGCAAGTGACGGATGGTGGCAAGATTATTCGTGTCA
TGGGTTCAATTGGTAGAGCTGCAAAAAATAGTGTAGTGACTTTGGATCGCGGTACAACTCAGGGCATTCAAGTAGGTCAA
GTTTTTGATATTACTCAACAAGGTGAATCAATTCGCGACCCTAAAACCAAAGAAGTGATTCAACTTCCTGGCCAACAAAT
TGGCAGTCTAATGGTTTTTAGAACTTTTGATCAGCTAAGTTATGCTTATGTTTTAGAGAGCGATTTACCAATTAAGGTTG
GTTCAAGCATTCAGCCACCTCAATTTAATGATTAA

Domains


Predicted by InterproScan.

(57-102)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

99.74

100

0.997