Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxP   Type   Regulator
Locus tag   IUZ65_RS16890 Genome accession   NZ_CP087591
Coordinates   58360..59457 (-) Length   365 a.a.
NCBI ID   WP_195705212.1    Uniprot ID   -
Organism   Vibrio sp. VB16     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 53360..64457
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IUZ65_RS16870 (IUZ65_016870) - 54426..54590 (+) 165 WP_195705208.1 hypothetical protein -
  IUZ65_RS16875 (IUZ65_016875) - 54719..55003 (+) 285 WP_195705209.1 hypothetical protein -
  IUZ65_RS16880 (IUZ65_016880) - 55132..55788 (+) 657 WP_195705210.1 PilZ domain-containing protein -
  IUZ65_RS16885 (IUZ65_016885) - 55802..58363 (-) 2562 WP_195705211.1 LuxQ periplasmic sensor domain-containing protein -
  IUZ65_RS16890 (IUZ65_016890) luxP 58360..59457 (-) 1098 WP_195705212.1 substrate-binding domain-containing protein Regulator
  IUZ65_RS16895 (IUZ65_016895) - 59597..60745 (-) 1149 WP_195705213.1 conjugal transfer protein TraF -
  IUZ65_RS16900 (IUZ65_016900) - 60862..61155 (-) 294 WP_195705214.1 GIY-YIG nuclease family protein -
  IUZ65_RS16905 (IUZ65_016905) - 61160..61825 (-) 666 WP_195705215.1 DUF480 domain-containing protein -
  IUZ65_RS16910 (IUZ65_016910) - 61902..62075 (-) 174 WP_195705216.1 hypothetical protein -
  IUZ65_RS16915 (IUZ65_016915) - 62275..62589 (+) 315 WP_195705217.1 DUF496 family protein -
  IUZ65_RS16920 (IUZ65_016920) - 62895..63149 (+) 255 WP_195705218.1 YgjV family protein -
  IUZ65_RS16925 (IUZ65_016925) - 63229..63696 (-) 468 WP_195705219.1 TetR family transcriptional regulator -
  IUZ65_RS16930 (IUZ65_016930) - 63953..64264 (+) 312 WP_195705220.1 YfcZ/YiiS family protein -

Sequence

Protein


Download         Length: 365 a.a.        Molecular weight: 41252.82 Da        Isoelectric Point: 6.1735

>NTDB_id=630246 IUZ65_RS16890 WP_195705212.1 58360..59457(-) (luxP) [Vibrio sp. VB16]
MKVNIARLSLVACLYSSYSCSVEVLSPYWSYSDFLDSHPEQQKLTNELAVTIDNNPVLLQVAQKDPIHISVVYPGEQESD
YWRRNILAFEQRLIELNITYSLEQIFTRPNADVKQQNSFLNNALKKNTDYLIFTLETGRHKKFIEHVLHNSDTKLILQNI
TTPVKTWDKKQPFLYVGFDHLVGSLMLADYFKKALPQGAEYSMLYYSQGYISAARGDTFIDAMANDHRYKLASSYYTKAT
KETGYIAAKSALSQASEIDFLYACSTDLALGAIDAIKESGNTQIKINGWGGGSAELDAIANGDLDVTVMRMNDDTGVAMA
EAIKWNIEGREVPIVYSGSFELITKEDSVEKIKRLKKRAFRYSDK

Nucleotide


Download         Length: 1098 bp        

>NTDB_id=630246 IUZ65_RS16890 WP_195705212.1 58360..59457(-) (luxP) [Vibrio sp. VB16]
ATGAAGGTCAATATAGCTCGGTTGTCACTGGTGGCTTGCCTCTATTCATCCTACAGTTGTTCGGTTGAAGTGCTTAGTCC
ATATTGGAGTTATTCTGATTTTCTAGATTCCCACCCAGAACAACAAAAACTGACAAACGAATTAGCCGTAACGATAGACA
ATAATCCTGTACTTTTGCAAGTGGCGCAGAAAGACCCTATTCATATCTCGGTGGTCTATCCTGGAGAACAGGAATCGGAC
TATTGGCGGAGGAATATCCTCGCGTTTGAACAGCGGCTAATTGAACTTAATATCACATATTCTCTTGAACAAATATTCAC
TCGACCAAACGCAGACGTAAAGCAACAAAACTCATTTCTTAACAACGCCCTTAAAAAAAATACGGACTACCTCATCTTCA
CTTTAGAAACAGGTAGGCATAAAAAGTTTATTGAACATGTTTTGCATAACTCAGATACCAAACTCATCTTACAAAATATT
ACCACACCCGTGAAAACGTGGGATAAGAAGCAACCGTTTCTATATGTAGGTTTTGACCACCTTGTGGGCAGTTTAATGCT
TGCTGATTACTTTAAGAAGGCATTACCACAAGGCGCAGAGTATTCGATGCTGTATTACTCTCAAGGCTATATTAGTGCGG
CTAGAGGTGACACTTTTATTGATGCTATGGCAAATGATCACCGTTACAAACTGGCTTCTTCATACTATACAAAAGCAACG
AAAGAAACGGGTTATATCGCCGCCAAATCAGCGCTCAGTCAGGCATCAGAAATAGACTTTCTTTATGCCTGCTCTACGGA
CCTAGCGTTAGGTGCCATCGACGCAATAAAAGAGTCTGGCAACACTCAAATTAAGATTAATGGTTGGGGTGGTGGTTCCG
CTGAACTTGATGCTATTGCTAATGGCGATTTAGATGTCACTGTTATGCGAATGAACGATGATACAGGCGTTGCAATGGCA
GAAGCCATAAAATGGAATATAGAAGGTCGAGAGGTACCTATCGTGTATTCGGGGAGCTTCGAACTTATTACTAAAGAAGA
CAGTGTGGAAAAAATCAAACGTTTAAAAAAACGGGCTTTTAGGTACTCCGATAAATGA

Domains

Predicted by InterproScan.

Periplasmic binding protein domain (Peripla_BP_4)

(69-324)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxP Vibrio cholerae strain A1552

58.449

98.904

0.578