Detailed information NTG0630239

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: IUZ65_RS15440
• Genome accession: NZ_CP087590
• Coordinates: 3392489..3393493 (+)
• Length: 334 a.a.
• NCBI ID: WP_195704551.1
• Uniprot ID: -
• Organism: Vibrio sp. VB16
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 3387489..3398493

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IUZ65_RS15420 (IUZ65_015420)	metJ	3387653..3387973 (+)	321	WP_195704547.1	met regulon transcriptional regulator MetJ	-
IUZ65_RS15425 (IUZ65_015425)	-	3388134..3389393 (-)	1260	WP_195704548.1	malic enzyme-like NAD(P)-binding protein	-
IUZ65_RS15430 (IUZ65_015430)	rpmE	3389572..3389787 (-)	216	WP_195704549.1	50S ribosomal protein L31	-
IUZ65_RS15435 (IUZ65_015435)	priA	3390107..3392308 (+)	2202	WP_195704550.1	primosomal protein N'	-
IUZ65_RS15440 (IUZ65_015440)	cytR	3392489..3393493 (+)	1005	WP_195704551.1	DNA-binding transcriptional regulator CytR	Regulator
IUZ65_RS15445 (IUZ65_015445)	-	3393625..3394173 (+)	549	WP_195704552.1	SPOR domain-containing protein	-
IUZ65_RS15450 (IUZ65_015450)	hslV	3394308..3394826 (+)	519	WP_195704553.1	ATP-dependent protease subunit HslV	-
IUZ65_RS15455 (IUZ65_015455)	hslU	3394856..3396190 (+)	1335	WP_195704554.1	HslU--HslV peptidase ATPase subunit	-
IUZ65_RS15460 (IUZ65_015460)	-	3396291..3397208 (+)	918	WP_195704555.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
IUZ65_RS15465 (IUZ65_015465)	rraA	3397286..3397825 (+)	540	WP_195704556.1	ribonuclease E activity regulator RraA	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 36714.33 Da
• Isoelectric Point: 8.3220

>NTDB_id=630239 IUZ65_RS15440 WP_195704551.1 3392489..3393493(+) (cytR) [Vibrio sp. VB16]
MATMKDVAQLAGVSTATVSRALMNPEKVSASTRKRVEDAVLEAGYSPNSLARNLRRNESKTIITIVPDICDPYFTEIIRG
IEDAAMEHGYLVLLGDSGKQQKRESSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPLVMACEYAPELELPTVHIDN
LTSAFEAVNYLTQMGHKKIAQISGPEKAALCKFRHQGYQQALRRAGIALNSTYTTQSNFTFEGGAKALRKLLSLPDAPTA
IFCHNDTMAIGAIQEAKKLGLRVPQDLSVVGFDDIQFSQYCDPPLTTVSQPRYEIGRQAMLMMLELLKGRDVRAGSRLLE
TKLVIRNSAAPPRA

Nucleotide

• Length: 1005 bp

>NTDB_id=630239 IUZ65_RS15440 WP_195704551.1 3392489..3393493(+) (cytR) [Vibrio sp. VB16]
ATGGCGACAATGAAGGATGTTGCCCAGCTTGCGGGTGTTTCAACCGCTACGGTCTCTCGCGCTTTAATGAACCCAGAAAA
AGTTTCTGCGTCAACTAGAAAACGTGTAGAAGACGCTGTACTAGAAGCTGGATATTCCCCAAACTCTTTAGCTCGAAATC
TCCGTAGGAATGAATCAAAGACAATTATCACCATTGTTCCGGATATTTGTGACCCATATTTTACAGAGATCATTCGTGGT
ATTGAAGACGCAGCGATGGAACATGGTTATCTAGTTCTACTTGGTGATAGCGGCAAACAGCAAAAAAGAGAAAGCTCTTT
CGTTAATCTGGTTTTTACTAAACAAGCTGACGGCATGTTACTGCTTGGCACCGATTTACCATTCGATGTCAGTAAACCTG
AACAAAAAAATCTCCCTCCTCTGGTAATGGCTTGTGAATACGCTCCGGAATTAGAACTACCAACCGTGCATATTGATAAT
TTAACATCGGCATTTGAAGCGGTTAATTATCTAACCCAAATGGGTCACAAAAAAATTGCGCAAATTTCTGGTCCAGAAAA
GGCAGCGTTATGTAAATTCCGACATCAAGGTTATCAGCAAGCTTTACGTAGAGCCGGAATAGCACTCAATTCAACTTACA
CCACTCAAAGTAATTTCACCTTTGAAGGTGGCGCTAAAGCACTTAGAAAACTACTTTCATTACCAGACGCGCCAACAGCC
ATATTTTGCCACAACGATACCATGGCGATTGGTGCAATACAGGAAGCGAAAAAACTGGGCTTGCGTGTGCCTCAAGATCT
GTCAGTGGTTGGTTTTGATGATATTCAATTTTCTCAATATTGTGATCCTCCATTAACCACGGTATCTCAACCTCGTTACG
AGATTGGGCGTCAAGCAATGTTAATGATGCTAGAGCTACTTAAAGGTAGAGATGTAAGAGCGGGTTCAAGATTACTTGAG
ACAAAACTCGTTATCAGAAATAGCGCGGCTCCCCCTAGAGCCTAG

Domains

Predicted by InterproScan.

• Periplasmic binding protein-like domain (Peripla_BP_3) (168-328)

• Bacterial regulatory proteins, lacI family (LacI) (3-48)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio cholerae C6706	89.157	99.401	0.886
cytR	Vibrio parahaemolyticus RIMD 2210633	87.688	99.701	0.874