Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   IUZ65_RS13850 Genome accession   NZ_CP087590
Coordinates   3039127..3039642 (-) Length   171 a.a.
NCBI ID   WP_195704276.1    Uniprot ID   -
Organism   Vibrio sp. VB16     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3034127..3044642
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IUZ65_RS13825 (IUZ65_013825) rimM 3034207..3034761 (-) 555 WP_195704271.1 ribosome maturation factor RimM -
  IUZ65_RS13830 (IUZ65_013830) rpsP 3034780..3035028 (-) 249 WP_195704272.1 30S ribosomal protein S16 -
  IUZ65_RS13835 (IUZ65_013835) ffh 3035286..3036680 (-) 1395 WP_195704273.1 signal recognition particle protein -
  IUZ65_RS13840 (IUZ65_013840) - 3036865..3037662 (+) 798 WP_195704274.1 inner membrane protein YpjD -
  IUZ65_RS13845 (IUZ65_013845) - 3037767..3039032 (+) 1266 WP_195704275.1 CNNM domain-containing protein -
  IUZ65_RS13850 (IUZ65_013850) luxS 3039127..3039642 (-) 516 WP_195704276.1 S-ribosylhomocysteine lyase Regulator
  IUZ65_RS13855 (IUZ65_013855) gshA 3039686..3041251 (-) 1566 WP_195704277.1 glutamate--cysteine ligase -
  IUZ65_RS13860 (IUZ65_013860) - 3041378..3044230 (-) 2853 WP_195704278.1 pitrilysin family protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18855.70 Da        Isoelectric Point: 4.9931

>NTDB_id=630235 IUZ65_RS13850 WP_195704276.1 3039127..3039642(-) (luxS) [Vibrio sp. VB16]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFCVPNKEILSEQGIHTLEHLYAGFMRAHLNGAGIEIIDISP
MGCRTGFYMSLIGTPAEEHVADAWLAAMEDVLKVENQNNIPELNEYQCGTYGMHSLADAKNIAKNVIEAGILVNKNDELA
LPASMLKELNK

Nucleotide


Download         Length: 516 bp        

>NTDB_id=630235 IUZ65_RS13850 WP_195704276.1 3039127..3039642(-) (luxS) [Vibrio sp. VB16]
ATGCCGTTACTAGATAGTTTTACTGTTGATCACACAAGAATGAATGCACCAGCTGTTCGCGTGGCAAAAACTATGCAAAC
GCCAAAAGGGGATACGATTACTGTATTTGATTTGCGTTTTTGTGTGCCAAATAAAGAGATACTCTCTGAACAAGGTATTC
ATACGTTAGAGCATTTGTATGCGGGCTTTATGCGTGCACATTTAAACGGTGCGGGTATTGAAATTATCGATATCTCTCCA
ATGGGTTGCCGTACCGGTTTTTATATGAGTTTGATTGGCACCCCAGCAGAAGAGCACGTAGCAGATGCGTGGTTAGCCGC
GATGGAAGATGTGCTAAAGGTAGAAAACCAAAATAACATTCCAGAGCTAAATGAATATCAATGTGGTACCTATGGTATGC
ACTCTTTAGCCGATGCGAAAAATATCGCCAAAAATGTGATTGAAGCTGGGATTTTAGTGAATAAAAATGACGAGTTGGCA
TTGCCTGCTTCGATGTTGAAAGAGCTGAATAAGTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

84.024

98.83

0.83