Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   IUZ65_RS11280 Genome accession   NZ_CP087590
Coordinates   2498826..2500274 (-) Length   482 a.a.
NCBI ID   WP_195703820.1    Uniprot ID   -
Organism   Vibrio sp. VB16     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 2493826..2505274
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IUZ65_RS11245 (IUZ65_011245) moaE 2494335..2494793 (-) 459 WP_195703813.1 molybdopterin synthase catalytic subunit MoaE -
  IUZ65_RS11250 (IUZ65_011250) moaD 2494795..2495040 (-) 246 WP_195703814.1 molybdopterin synthase sulfur carrier subunit -
  IUZ65_RS11255 (IUZ65_011255) moaC 2495037..2495516 (-) 480 WP_195703815.1 cyclic pyranopterin monophosphate synthase MoaC -
  IUZ65_RS11260 (IUZ65_011260) moaB 2495523..2496035 (-) 513 WP_195703816.1 molybdenum cofactor biosynthesis protein B -
  IUZ65_RS11265 (IUZ65_011265) moaA 2496058..2497047 (-) 990 WP_195703817.1 GTP 3',8-cyclase MoaA -
  IUZ65_RS11270 (IUZ65_011270) yvcK 2497361..2498248 (+) 888 WP_195703818.1 uridine diphosphate-N-acetylglucosamine-binding protein YvcK -
  IUZ65_RS11275 (IUZ65_011275) - 2498377..2498721 (-) 345 WP_195703819.1 Hpt domain-containing protein -
  IUZ65_RS11280 (IUZ65_011280) luxO 2498826..2500274 (-) 1449 WP_195703820.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  IUZ65_RS11285 (IUZ65_011285) uvrB 2500573..2502603 (-) 2031 WP_195703821.1 excinuclease ABC subunit UvrB -
  IUZ65_RS11295 (IUZ65_011295) rsxA 2503575..2504156 (+) 582 WP_195703822.1 electron transport complex subunit RsxA -
  IUZ65_RS11300 (IUZ65_011300) rsxB 2504156..2504734 (+) 579 WP_195703823.1 electron transport complex subunit RsxB -

Sequence

Protein


Download         Length: 482 a.a.        Molecular weight: 53354.21 Da        Isoelectric Point: 6.2539

>NTDB_id=630231 IUZ65_RS11280 WP_195703820.1 2498826..2500274(-) (luxO) [Vibrio sp. VB16]
MKKPDLGMTAKYLLMVEDTASVAALYRSFLTPLGIDVEIVGTGKEALESLTIRIPDLILLDLRLPDMTGMDVLHSVKALY
PEVPIIFMTAHGSIDTAVDAMRYGAQDFLIKPCEADRLRVTVNNAIRRASKIKGGEGERGASVSSLNNYQGFIGSSHNML
SVYKTIDSAATSKASIFITGESGTGKEVCAEAIHAASRRRDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATERHGAA
ELADGGTLFLDELCEMDLDLQTKLLRFIQTGTFQKVGSSKMKSIDVRFVCATNRDPWKEVQHGRFREDLYYRLYVIPLHL
PPLRDRGEDVVEIAYSLLGYMSLEEEKSFTRFAQDVIDRFISYEWPGNVRQLQNVIRNAVVLNNGKEITLSMLPPPINQM
STKIALINNREGLLQDRFGSNTIGSTHEGLKPLSADDITPLWQVERNVIEQAIQACEGNIPQAANALEVSPSTIYRKKQS
WL

Nucleotide


Download         Length: 1449 bp        

>NTDB_id=630231 IUZ65_RS11280 WP_195703820.1 2498826..2500274(-) (luxO) [Vibrio sp. VB16]
ATGAAAAAACCGGATCTTGGTATGACAGCTAAGTATTTGCTTATGGTCGAAGATACCGCTTCAGTTGCGGCTTTATATCG
TTCTTTTTTAACGCCTCTCGGTATCGATGTGGAAATTGTTGGTACGGGTAAAGAGGCGCTGGAATCATTGACCATCCGGA
TTCCGGATCTCATCCTCTTAGATTTGCGCCTTCCCGATATGACAGGTATGGATGTGCTTCACTCAGTAAAAGCATTATAC
CCAGAAGTCCCTATCATCTTTATGACGGCACACGGTTCGATTGATACTGCCGTAGACGCAATGCGATATGGTGCTCAGGA
CTTCTTAATCAAACCTTGTGAAGCGGATAGGCTCAGGGTTACGGTAAATAATGCCATACGTCGAGCTAGTAAAATCAAGG
GTGGCGAAGGCGAGCGAGGAGCAAGCGTTAGTAGCTTGAATAACTATCAAGGCTTTATCGGTAGTAGTCACAATATGCTT
TCGGTATACAAGACGATCGACTCCGCAGCAACAAGCAAAGCGAGTATCTTTATTACTGGTGAAAGCGGCACAGGTAAAGA
GGTCTGTGCTGAAGCGATACACGCTGCGAGCCGTCGAAGAGACAAACCATTCATAGCAATTAATTGTGCCGCTATCCCGA
AAGACCTAATCGAAAGTGAATTGTTTGGTCACGTTAAGGGCGCTTTCACGGGGGCTGCGACTGAACGACACGGCGCTGCA
GAACTTGCTGACGGTGGGACATTGTTTTTGGATGAGCTTTGTGAAATGGATTTGGATCTGCAAACCAAACTATTGCGTTT
TATTCAAACCGGTACGTTTCAAAAAGTCGGTTCCTCTAAAATGAAGAGTATTGATGTACGTTTCGTTTGTGCAACCAATA
GGGACCCTTGGAAAGAGGTACAGCATGGACGTTTTAGAGAGGACCTTTATTACCGTTTGTATGTTATTCCGTTGCATTTG
CCTCCATTAAGAGACCGAGGAGAGGATGTTGTCGAGATAGCCTATTCGCTTTTGGGCTATATGTCATTGGAAGAGGAAAA
ATCGTTTACTCGTTTTGCGCAAGATGTAATAGATAGATTCATTTCCTATGAATGGCCTGGAAATGTGCGTCAGCTACAAA
ATGTAATACGCAATGCTGTTGTATTAAATAATGGGAAGGAAATCACATTAAGCATGCTTCCTCCCCCAATTAACCAAATG
AGCACAAAAATTGCTTTAATAAACAATAGAGAAGGATTATTGCAAGATAGATTTGGTTCAAACACCATCGGTTCTACCCA
TGAGGGTCTCAAACCGTTGTCTGCTGATGACATCACGCCTTTGTGGCAGGTTGAGAGAAATGTGATAGAGCAAGCCATCC
AAGCCTGCGAGGGGAACATCCCCCAAGCAGCAAATGCATTAGAAGTCAGTCCATCGACTATTTACAGGAAAAAACAGTCA
TGGTTATAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(14-122)

Sigma-54 interaction domain (Sigma54_activat)

(153-318)

Bacterial regulatory protein, Fis family (HTH_8)

(441-477)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

75.589

96.888

0.732