Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   IUZ65_RS10090 Genome accession   NZ_CP087590
Coordinates   2219330..2220505 (-) Length   391 a.a.
NCBI ID   WP_195703603.1    Uniprot ID   -
Organism   Vibrio sp. VB16     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2214330..2225505
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IUZ65_RS10070 (IUZ65_010070) - 2214472..2215701 (+) 1230 WP_195703599.1 OFA family MFS transporter -
  IUZ65_RS10075 (IUZ65_010075) - 2215828..2216571 (+) 744 WP_195703600.1 GntR family transcriptional regulator -
  IUZ65_RS10080 (IUZ65_010080) - 2216690..2217049 (+) 360 WP_195703601.1 5-carboxymethyl-2-hydroxymuconate Delta-isomerase -
  IUZ65_RS10085 (IUZ65_010085) - 2217204..2219252 (+) 2049 WP_195703602.1 hybrid sensor histidine kinase/response regulator -
  IUZ65_RS10090 (IUZ65_010090) cqsA 2219330..2220505 (-) 1176 WP_195703603.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  IUZ65_RS10095 (IUZ65_010095) - 2220803..2221966 (-) 1164 WP_195703604.1 helix-turn-helix domain-containing protein -
  IUZ65_RS10100 (IUZ65_010100) - 2222081..2222278 (-) 198 WP_195703605.1 hypothetical protein -
  IUZ65_RS10105 (IUZ65_010105) - 2222802..2224418 (-) 1617 WP_231363583.1 hypothetical protein -
  IUZ65_RS10110 (IUZ65_010110) - 2224597..2225034 (-) 438 WP_195703606.1 hypothetical protein -

Sequence

Protein


Download         Length: 391 a.a.        Molecular weight: 43610.72 Da        Isoelectric Point: 5.9371

>NTDB_id=630229 IUZ65_RS10090 WP_195703603.1 2219330..2220505(-) (cqsA) [Vibrio sp. VB16]
MSNKTKPLPAFIEERLDFYIEDIIESNQNQKHLVLGKRPTADAVVMQSNDYLALSHNKEIQAAHKRAISEQDDNVVMSAV
FLQDEESKPEFENELADYVGMESCLLSQSGWAANLGLLQTICAPGTPIYIDFFAHMSLWEGARISGGAIYPFMHNNIRHL
RKQIKRHGAGVIVVDSIYSTIGTIAPLEAIYEMANEFGCALVVDESHSLGTHGLNGSGLINALGVQDQVDFVTVSLAKTF
AYRAGAILGPKKLSQTLPFVSYPAIFSSTVLPQEVARLRKTLDIIKHAEEKRQTLFRRANELRTGLKGIGFNIRSESQII
SLECGEERNMERVRDFLEENDVFGAIFCRPATGKNKSIMRFSVNADMTEKDVDHVLTVCHEAYKNPNLEFV

Nucleotide


Download         Length: 1176 bp        

>NTDB_id=630229 IUZ65_RS10090 WP_195703603.1 2219330..2220505(-) (cqsA) [Vibrio sp. VB16]
ATGAGTAATAAAACGAAACCACTTCCTGCCTTTATTGAGGAACGCCTAGATTTTTATATTGAAGATATAATTGAATCAAA
TCAGAATCAAAAACATTTGGTTTTGGGTAAACGTCCAACCGCAGATGCGGTGGTCATGCAAAGTAATGATTATTTGGCAC
TGTCTCACAATAAGGAGATTCAAGCGGCCCACAAACGAGCGATCTCAGAGCAAGATGACAATGTCGTTATGTCAGCCGTC
TTTCTGCAGGATGAAGAATCAAAGCCAGAGTTCGAGAATGAGCTTGCTGATTATGTGGGCATGGAAAGCTGTTTGTTGTC
TCAATCTGGCTGGGCTGCGAATCTTGGTCTGTTACAAACCATTTGTGCCCCAGGGACGCCGATCTATATCGATTTTTTTG
CCCACATGTCTTTATGGGAAGGCGCTAGAATATCGGGCGGGGCTATTTATCCATTCATGCACAATAATATTCGGCATTTG
CGTAAACAGATTAAGAGACATGGCGCTGGAGTCATTGTTGTTGATTCGATCTACAGCACAATAGGAACAATTGCACCACT
TGAAGCTATCTACGAAATGGCAAACGAGTTTGGTTGTGCGTTGGTCGTCGACGAATCCCATTCATTAGGTACCCATGGCC
TGAACGGGTCAGGGTTAATAAATGCGTTGGGAGTTCAAGATCAAGTGGATTTTGTTACGGTAAGTTTGGCCAAGACGTTC
GCTTATCGTGCAGGTGCTATATTAGGCCCGAAGAAGCTTAGTCAGACATTACCTTTTGTCTCATACCCGGCTATTTTTAG
CTCTACTGTGTTGCCTCAGGAGGTCGCTAGGCTAAGAAAAACACTAGATATAATTAAACATGCAGAGGAAAAAAGACAAA
CATTATTTCGTCGTGCAAATGAGCTAAGAACGGGATTAAAGGGGATAGGCTTTAACATTCGTAGCGAGTCACAGATTATA
TCTTTGGAATGTGGCGAAGAACGAAACATGGAGCGCGTAAGAGATTTCCTTGAAGAGAATGATGTATTTGGGGCTATTTT
CTGTCGCCCCGCGACAGGAAAAAACAAAAGCATAATGCGTTTTTCGGTCAATGCAGATATGACCGAAAAAGACGTTGACC
ACGTTTTGACGGTTTGTCATGAAGCATACAAAAATCCAAACCTAGAGTTTGTGTAG

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(44-376)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

56.477

98.721

0.558