Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   IUZ65_RS07830 Genome accession   NZ_CP087590
Coordinates   1701919..1703352 (-) Length   477 a.a.
NCBI ID   WP_195703202.1    Uniprot ID   -
Organism   Vibrio sp. VB16     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1696919..1708352
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IUZ65_RS07810 (IUZ65_007810) cdd 1697711..1698598 (-) 888 WP_195703199.1 cytidine deaminase -
  IUZ65_RS07815 (IUZ65_007815) - 1698998..1700368 (-) 1371 WP_195703200.1 DEAD/DEAH box helicase -
  IUZ65_RS07820 (IUZ65_007820) - 1700865..1701554 (-) 690 WP_195705044.1 LrgB family protein -
  IUZ65_RS07825 (IUZ65_007825) - 1701554..1701916 (-) 363 WP_195703201.1 CidA/LrgA family protein -
  IUZ65_RS07830 (IUZ65_007830) sbcB 1701919..1703352 (-) 1434 WP_195703202.1 exodeoxyribonuclease I Machinery gene
  IUZ65_RS07835 (IUZ65_007835) - 1703450..1704157 (-) 708 WP_195703203.1 NAD(P)H-binding protein -
  IUZ65_RS07840 (IUZ65_007840) - 1704477..1705088 (+) 612 WP_195703204.1 flavin reductase family protein -
  IUZ65_RS07845 (IUZ65_007845) cobT 1705120..1706148 (+) 1029 WP_195703205.1 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase -
  IUZ65_RS07850 (IUZ65_007850) astE 1706377..1707408 (+) 1032 WP_195703206.1 succinylglutamate desuccinylase -
  IUZ65_RS07855 (IUZ65_007855) - 1707769..1708341 (-) 573 WP_195703207.1 nucleoside triphosphate pyrophosphohydrolase family protein -

Sequence

Protein


Download         Length: 477 a.a.        Molecular weight: 55245.81 Da        Isoelectric Point: 5.0887

>NTDB_id=630228 IUZ65_RS07830 WP_195703202.1 1701919..1703352(-) (sbcB) [Vibrio sp. VB16]
MTNYKNNEQPTFFWFDYETWGISPSKDRPSQFAGVRTDMDFNIIGEPLVIYCQPPVDYLPSPEAALITRITPQKAVQQGL
PEPEFIRRIHDALSTPNTTSLGYNSIRFDDEVTRYTLYRNFFDPYAWSWKNGNSRWDLLDVMRTCYALRPEGINWPVDDE
GFPSFKLEKLSVENGIEHENAHDAMADVIATIELAKKLKAAQPKLFDYLFSMRHKRKLNELVDIINMTPLVHVSGMFGVG
CSNTSWVVPMAWHPKNQNAVIMINLAMDPTPLLELSSDQIRERMYTKRADLEAGQQPIPLKLVHLNKCPILAPAKTLTAE
NAERIGINREECLQNLARLKQHPEIREKLIDLYSIDRDYADNDNVDNQLYDGFFTPSDRAAMDIILEAKPENLAVLDIQF
GDKRIAPLLFKYRARNYVETLSDEEQQRWTRHCRDYFETSLPDYMLNLENLAHEHESDEKKLAILKSVYKYVEQLVS

Nucleotide


Download         Length: 1434 bp        

>NTDB_id=630228 IUZ65_RS07830 WP_195703202.1 1701919..1703352(-) (sbcB) [Vibrio sp. VB16]
ATGACAAATTATAAAAACAACGAACAGCCTACATTCTTCTGGTTCGACTATGAAACCTGGGGGATAAGCCCTTCAAAAGA
TAGGCCTAGTCAATTTGCTGGCGTTCGTACCGATATGGATTTCAATATTATTGGCGAGCCTCTTGTCATCTATTGTCAGC
CACCTGTTGATTATCTACCGTCACCAGAAGCCGCACTTATCACTCGCATCACACCACAGAAAGCCGTCCAACAAGGTTTG
CCTGAACCAGAATTTATTCGACGAATCCACGACGCTCTTTCAACCCCAAACACCACCAGTTTGGGTTATAACAGTATTCG
ATTCGATGATGAAGTAACACGTTACACACTATACCGTAATTTTTTTGACCCATACGCATGGAGTTGGAAGAATGGTAATT
CCCGCTGGGACCTTTTGGATGTAATGAGAACGTGCTACGCACTTCGTCCTGAAGGAATAAACTGGCCTGTCGATGATGAA
GGTTTCCCGAGTTTCAAATTAGAAAAGCTCTCAGTTGAAAACGGTATCGAGCACGAGAATGCTCACGATGCGATGGCAGA
TGTCATCGCCACAATAGAGCTTGCAAAAAAATTGAAGGCAGCCCAACCAAAATTATTCGATTACCTTTTTAGCATGCGCC
ACAAGCGAAAGCTAAATGAGTTAGTGGATATCATCAACATGACGCCTCTTGTCCATGTATCCGGGATGTTCGGTGTTGGT
TGCTCAAATACCAGTTGGGTTGTACCAATGGCATGGCATCCAAAAAATCAGAATGCTGTCATTATGATTAACCTTGCCAT
GGATCCAACGCCACTTTTGGAGCTGAGTTCAGATCAAATACGCGAACGTATGTACACTAAACGAGCAGACCTTGAAGCCG
GACAACAGCCTATCCCTTTAAAGTTGGTGCACTTAAATAAATGCCCAATTTTGGCCCCTGCCAAAACGCTCACAGCTGAG
AACGCAGAACGAATCGGCATAAACAGAGAAGAGTGCCTTCAGAACCTTGCTAGACTAAAGCAGCATCCAGAGATTCGCGA
AAAACTGATAGATTTATACTCGATAGATAGAGATTATGCGGATAACGACAATGTAGATAACCAGCTTTATGACGGTTTTT
TTACGCCTTCAGATAGAGCGGCGATGGATATCATTCTAGAAGCAAAACCCGAAAACTTGGCTGTACTAGACATACAATTT
GGCGATAAACGTATCGCACCGCTTTTGTTTAAATACAGAGCGCGCAATTATGTAGAGACGTTAAGTGATGAAGAACAACA
GCGATGGACTCGCCACTGCCGGGACTATTTTGAAACATCACTTCCGGATTATATGCTCAATCTGGAAAACCTCGCTCACG
AACATGAAAGCGATGAGAAAAAACTCGCTATTCTAAAGTCCGTGTATAAATATGTTGAACAACTCGTCTCATAA

Domains

Predicted by InterproScan.

Exonuclease (RNase_T)

(14-194)

Exonuclease C-terminal (Exonuc_X-T_C)

(213-474)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

71.186

98.952

0.704