Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   IUZ65_RS03775 Genome accession   NZ_CP087590
Coordinates   775931..776920 (-) Length   329 a.a.
NCBI ID   WP_195702466.1    Uniprot ID   -
Organism   Vibrio sp. VB16     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 770931..781920
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IUZ65_RS03740 (IUZ65_003740) - 771153..771929 (+) 777 WP_195702459.1 Zn-ribbon-containing protein -
  IUZ65_RS03745 (IUZ65_003745) - 771941..772384 (-) 444 WP_195702460.1 YaiI/YqxD family protein -
  IUZ65_RS03750 (IUZ65_003750) - 772381..772662 (-) 282 WP_195702461.1 hypothetical protein -
  IUZ65_RS03755 (IUZ65_003755) - 773406..773720 (-) 315 WP_195702462.1 DUF3301 domain-containing protein -
  IUZ65_RS03760 (IUZ65_003760) - 773720..774766 (-) 1047 WP_195702463.1 DUF3549 family protein -
  IUZ65_RS03765 (IUZ65_003765) - 774848..775159 (+) 312 WP_195702464.1 YqcC family protein -
  IUZ65_RS03770 (IUZ65_003770) truC 775159..775887 (+) 729 WP_195702465.1 tRNA pseudouridine(65) synthase TruC -
  IUZ65_RS03775 (IUZ65_003775) cytR 775931..776920 (-) 990 WP_195702466.1 LacI family DNA-binding transcriptional regulator Regulator
  IUZ65_RS03780 (IUZ65_003780) - 777280..778335 (+) 1056 WP_195702467.1 sugar phosphate isomerase/epimerase -
  IUZ65_RS03785 (IUZ65_003785) - 778349..779506 (+) 1158 WP_195702468.1 Gfo/Idh/MocA family oxidoreductase -
  IUZ65_RS03790 (IUZ65_003790) - 779507..781051 (+) 1545 WP_195702469.1 sugar ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 329 a.a.        Molecular weight: 35818.38 Da        Isoelectric Point: 7.6319

>NTDB_id=630220 IUZ65_RS03775 WP_195702466.1 775931..776920(-) (cytR) [Vibrio sp. VB16]
MPTIKDVAKLAGVSTATVSRAMAAPEKVSAKNRKKVELAVAECGFTPNAIARNLRKSESKTVVVILPDIANMFFADIVKG
IQLVAQQEGYKVLLGDSVHTVQQAKEYIDLVRTKQADGIISLTSELPSDIQKGANIPIVMACEYFSGFPIPTVRVDNFDS
AKRATEYLIELGHTRIGCITGPMGNPICGDRKQGYIKAESNANIDINDNAFESGDFSFHSGYAAFQRLATQYEMTALFCF
NDMMALGAMRAAIEMGIDVPKQLSIIGFDDLLFAQYTTPQLTTIRQPQKQLGETAMQVLTKILKGEKVPQDSVIPTQLIV
RSSSTIAAK

Nucleotide


Download         Length: 990 bp        

>NTDB_id=630220 IUZ65_RS03775 WP_195702466.1 775931..776920(-) (cytR) [Vibrio sp. VB16]
ATGCCCACAATAAAAGATGTAGCGAAGCTTGCTGGCGTCTCCACCGCTACCGTTTCTAGAGCGATGGCTGCACCAGAAAA
AGTATCGGCAAAAAATCGTAAAAAAGTGGAATTAGCGGTAGCTGAATGCGGTTTTACACCGAATGCCATTGCCAGAAATT
TGCGTAAAAGCGAATCGAAAACGGTGGTTGTCATTTTACCTGATATCGCCAATATGTTTTTTGCTGATATCGTCAAAGGG
ATACAATTGGTTGCCCAACAAGAAGGTTATAAAGTTCTTCTCGGTGACTCTGTTCATACTGTACAACAGGCAAAAGAATA
CATTGATTTGGTTCGAACAAAACAAGCCGATGGGATCATCAGTTTAACATCGGAACTTCCGAGTGATATTCAGAAAGGGG
CCAACATTCCGATTGTCATGGCCTGCGAATATTTTAGTGGTTTCCCTATCCCAACCGTCCGCGTAGACAATTTTGACTCC
GCCAAGAGAGCAACGGAATACTTAATTGAACTCGGTCATACAAGAATTGGTTGCATCACAGGTCCAATGGGAAATCCGAT
CTGTGGTGACCGAAAACAAGGCTATATCAAAGCAGAGAGTAACGCCAATATTGACATCAACGACAACGCGTTTGAATCTG
GAGATTTTAGTTTTCATTCTGGTTACGCCGCCTTTCAAAGGCTCGCGACCCAATATGAAATGACGGCACTTTTTTGTTTT
AACGATATGATGGCACTAGGTGCTATGCGTGCAGCGATAGAGATGGGTATCGACGTTCCAAAACAGCTTTCAATTATCGG
CTTTGATGACTTATTGTTTGCGCAGTATACGACCCCTCAATTAACCACGATTCGCCAGCCTCAAAAACAATTAGGCGAAA
CCGCCATGCAAGTTCTTACAAAGATTCTTAAGGGCGAAAAAGTCCCGCAAGACAGCGTCATACCGACACAACTTATAGTA
AGAAGCAGTTCAACTATCGCGGCTAAATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, lacI family (LacI)

(3-48)

Periplasmic binding protein-like domain (Peripla_BP_3)

(165-324)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

47.904

100

0.486
  cytR Vibrio parahaemolyticus RIMD 2210633

47.416

100

0.474