Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   IUZ65_RS02315 Genome accession   NZ_CP087590
Coordinates   469008..469991 (+) Length   327 a.a.
NCBI ID   WP_195702194.1    Uniprot ID   -
Organism   Vibrio sp. VB16     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 464008..474991
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IUZ65_RS02285 (IUZ65_002285) ispD 464279..464992 (+) 714 WP_195702188.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  IUZ65_RS02290 (IUZ65_002290) ispF 465073..465555 (+) 483 WP_195702189.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  IUZ65_RS02295 (IUZ65_002295) truD 465555..466607 (+) 1053 WP_195702190.1 tRNA pseudouridine(13) synthase TruD -
  IUZ65_RS02300 (IUZ65_002300) surE 466611..467360 (+) 750 WP_195702191.1 5'/3'-nucleotidase SurE -
  IUZ65_RS02305 (IUZ65_002305) - 467357..467983 (+) 627 WP_195702192.1 protein-L-isoaspartate(D-aspartate) O-methyltransferase -
  IUZ65_RS02310 (IUZ65_002310) - 467987..468943 (+) 957 WP_195702193.1 peptidoglycan DD-metalloendopeptidase family protein -
  IUZ65_RS02315 (IUZ65_002315) rpoS 469008..469991 (+) 984 WP_195702194.1 RNA polymerase sigma factor RpoS Regulator
  IUZ65_RS02320 (IUZ65_002320) mutS 470063..472624 (-) 2562 WP_195702195.1 DNA mismatch repair protein MutS -
  IUZ65_RS02325 (IUZ65_002325) - 472937..473419 (+) 483 WP_195702196.1 CinA family protein -
  IUZ65_RS02330 (IUZ65_002330) - 473425..474045 (-) 621 WP_195702197.1 TRIC cation channel family protein -

Sequence

Protein


Download         Length: 327 a.a.        Molecular weight: 37395.69 Da        Isoelectric Point: 4.9851

>NTDB_id=630216 IUZ65_RS02315 WP_195702194.1 469008..469991(+) (rpoS) [Vibrio sp. VB16]
MGISNAATKVEEFETNEKALEELGSGRLVQEVKSKKVAKEELEVTAKSLDATQLYLGEIGFSPLLTAEEEVLYARRALRG
DEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIR
LPIHVVKELNIYLRTARELSQKLDHEPTAEEIAEKLDKPVSDVSKMLRLNERVSSVDTPIGGDGEKVLLDIIPDTNHSDP
EVSTQDDDIKNSLIDWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREISLTRERVRQIQVEGLRRLREILLKQGLNMES
LFDVDQM

Nucleotide


Download         Length: 984 bp        

>NTDB_id=630216 IUZ65_RS02315 WP_195702194.1 469008..469991(+) (rpoS) [Vibrio sp. VB16]
ATGGGTATCAGCAATGCAGCAACAAAAGTCGAAGAGTTCGAGACAAACGAGAAAGCTCTGGAAGAGCTGGGTTCGGGTCG
TCTTGTACAAGAAGTTAAATCTAAAAAGGTAGCTAAAGAAGAGTTAGAAGTCACCGCTAAAAGTCTAGATGCAACACAAC
TTTATCTTGGGGAAATTGGTTTCTCTCCACTATTAACGGCAGAAGAAGAAGTGTTGTACGCTCGAAGAGCTTTACGCGGC
GACGAAGCAGCACGTAAACGTATGATTGAAAGTAATCTGCGTCTTGTGGTTAAGATATCACGTCGTTACAGTAACCGAGG
ACTCGCGTTACTTGATCTCATTGAAGAAGGCAACCTAGGCCTTATCCGTGCAGTTGAGAAATTTGATCCAGAACGTGGAT
TTAGATTCTCTACATACGCCACGTGGTGGATTCGTCAAACAATAGAACGTGCATTGATGAACCAGACACGCACCATCCGT
TTACCCATCCACGTTGTTAAAGAGTTAAATATCTATCTAAGAACCGCGCGTGAACTTTCACAAAAGTTGGATCACGAGCC
TACAGCAGAAGAAATTGCTGAAAAACTAGATAAGCCTGTGAGTGATGTCAGTAAGATGTTACGTCTAAACGAGCGAGTAA
GCTCGGTAGATACACCGATTGGTGGTGATGGCGAAAAAGTACTACTCGATATTATTCCAGATACTAACCACTCAGATCCT
GAGGTATCAACTCAAGATGATGATATTAAAAATTCGCTTATCGACTGGTTAGATGAATTAAACCCTAAGCAGAAAGAAGT
ACTCGCGAGACGGTTTGGATTACTTGGTTACGAGCCGTCAACACTTGAAGAAGTCGGCCGTGAAATTAGCCTAACACGTG
AACGTGTACGTCAGATACAGGTGGAAGGTTTACGCCGGTTACGTGAAATCTTACTCAAGCAGGGATTGAATATGGAATCT
CTATTTGATGTTGATCAGATGTAA

Domains

Predicted by InterproScan.

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(50-83)

Sigma-70 region 3 (Sigma70_r3)

(168-241)

Sigma-70, region 4 (Sigma70_r4)

(256-309)

Sigma-70 region 2 (Sigma70_r2)

(88-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

81.928

100

0.832