Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   LMY39_RS04490 Genome accession   NZ_CP087584
Coordinates   1047273..1048340 (+) Length   355 a.a.
NCBI ID   WP_048608224.1    Uniprot ID   A0AA97CND5
Organism   Providencia rettgeri strain L1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1042273..1053340
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LMY39_RS04470 (LMY39_04470) aroL 1042664..1043161 (+) 498 WP_042848746.1 shikimate kinase AroL -
  LMY39_RS04475 (LMY39_04475) aas 1043299..1045446 (+) 2148 WP_042848693.1 bifunctional acyl-ACP--phospholipid O-acyltransferase/long-chain-fatty-acid--ACP ligase -
  LMY39_RS04480 (LMY39_04480) lplT 1045448..1046650 (+) 1203 WP_042848691.1 lysophospholipid transporter LplT -
  LMY39_RS04485 (LMY39_04485) pncC 1046665..1047180 (+) 516 WP_048608226.1 nicotinamide-nucleotide amidase -
  LMY39_RS04490 (LMY39_04490) recA 1047273..1048340 (+) 1068 WP_048608224.1 recombinase RecA Machinery gene
  LMY39_RS04495 (LMY39_04495) alaS 1048666..1051293 (+) 2628 WP_042848688.1 alanine--tRNA ligase -
  LMY39_RS04500 (LMY39_04500) csrA 1051522..1051707 (+) 186 WP_004264815.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 355 a.a.        Molecular weight: 38107.46 Da        Isoelectric Point: 4.8166

>NTDB_id=630184 LMY39_RS04490 WP_048608224.1 1047273..1048340(+) (recA) [Providencia rettgeri strain L1]
MAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDVALGAGGLPLGRIVEIYGPEASGKTTLTLQV
IAAAQRSGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEI
GDSHMGLAARMMSQAMRKLAGNLKTSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKNGEEIVG
SETRVKVVKNKVAAPFKQAEFQILYGEGINTFGELIDLGVKHKLIEKAGAWYSYNGDKIGQGKANSTTYLKEHPEIAQEI
DTKLREMLLNHTGEFSSAAEDFVSGSDEEETPEEI

Nucleotide


Download         Length: 1068 bp        

>NTDB_id=630184 LMY39_RS04490 WP_048608224.1 1047273..1048340(+) (recA) [Providencia rettgeri strain L1]
ATGGCTATTGATGAAAACAAACAAAAAGCACTTGCAGCAGCATTAGGCCAAATTGAAAAACAATTTGGTAAAGGCTCCAT
TATGCGTCTTGGTGAAGACCGCTCTATGGATGTTGAAACGATTTCAACAGGCTCCTTATCCCTTGATGTTGCATTAGGCG
CTGGTGGCTTGCCATTAGGTCGTATTGTTGAAATCTACGGTCCTGAAGCTTCGGGTAAAACAACATTAACTTTACAGGTT
ATTGCTGCGGCACAACGCAGTGGTAAAACTTGCGCATTTATCGATGCAGAGCACGCCTTAGACCCTATCTATGCGAAAAA
ATTAGGCGTAGATATTGATAACTTATTATGTTCACAACCCGATACAGGTGAACAAGCTCTTGAAATTTGTGATGCATTAA
CACGCTCAGGGGCGGTTGATGTTATTATCGTTGACTCTGTTGCTGCGTTAACACCTAAAGCTGAAATTGAAGGCGAGATT
GGTGATTCTCATATGGGTCTAGCAGCCCGTATGATGAGCCAAGCAATGCGTAAATTGGCGGGGAATTTAAAAACGTCAAA
TACCTTACTGATCTTTATCAACCAAATTCGTATGAAGATTGGTGTTATGTTTGGTAATCCGGAAACCACTACAGGTGGTA
ACGCATTGAAATTCTACGCATCTGTCCGTTTAGATATTCGCCGTATCGGTGCGGTGAAAAACGGTGAAGAAATTGTAGGT
AGCGAAACCCGTGTTAAAGTTGTGAAAAATAAAGTCGCAGCACCATTTAAACAAGCTGAATTCCAAATTCTTTATGGTGA
AGGGATTAACACCTTCGGTGAGCTTATTGACTTAGGTGTAAAACATAAATTAATTGAAAAAGCGGGTGCTTGGTATAGCT
ATAACGGGGACAAAATCGGTCAAGGTAAAGCTAACTCAACAACTTATTTAAAAGAGCATCCTGAAATAGCACAGGAAATT
GATACGAAACTACGCGAAATGTTATTAAATCATACTGGTGAATTTAGTAGCGCTGCGGAAGATTTCGTCAGTGGTTCTGA
TGAAGAAGAAACACCAGAAGAAATTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

81.02

99.437

0.806
  recA Vibrio cholerae O1 biovar El Tor strain E7946

81.02

99.437

0.806
  recA Pseudomonas stutzeri DSM 10701

75.535

92.113

0.696
  recA Acinetobacter baumannii D1279779

70.69

98.028

0.693
  recA Acinetobacter baylyi ADP1

69.886

99.155

0.693
  recA Glaesserella parasuis strain SC1401

68.661

98.873

0.679
  recA Neisseria gonorrhoeae MS11

69.018

91.831

0.634
  recA Neisseria gonorrhoeae MS11

69.018

91.831

0.634
  recA Neisseria gonorrhoeae strain FA1090

69.018

91.831

0.634
  recA Ralstonia pseudosolanacearum GMI1000

70.418

87.606

0.617
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

59.659

99.155

0.592
  recA Helicobacter pylori strain NCTC11637

62.997

92.113

0.58
  recA Helicobacter pylori 26695

62.691

92.113

0.577
  recA Streptococcus pneumoniae R6

62.539

90.986

0.569
  recA Streptococcus pneumoniae D39

62.539

90.986

0.569
  recA Streptococcus pneumoniae TIGR4

62.539

90.986

0.569
  recA Streptococcus pneumoniae Rx1

62.539

90.986

0.569
  recA Streptococcus mitis NCTC 12261

61.92

90.986

0.563
  recA Streptococcus mutans UA159

61.231

91.549

0.561
  recA Streptococcus mitis SK321

61.61

90.986

0.561
  recA Streptococcus pyogenes NZ131

60.923

91.549

0.558
  recA Bacillus subtilis subsp. subtilis str. 168

61.682

90.423

0.558
  recA Lactococcus lactis subsp. cremoris KW2

60.991

90.986

0.555
  recA Latilactobacillus sakei subsp. sakei 23K

60.615

91.549

0.555
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.036

93.521

0.552
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.125

90.423

0.544