Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   LL667_RS07180 Genome accession   NZ_CP087583
Coordinates   1511632..1512741 (-) Length   369 a.a.
NCBI ID   WP_218248279.1    Uniprot ID   -
Organism   Kaistella faecalis strain F4     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1506632..1517741
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LL667_RS07170 (LL667_07170) - 1509269..1509880 (-) 612 WP_218248277.1 YdeI/OmpD-associated family protein -
  LL667_RS07175 (LL667_07175) gdhA 1510088..1511446 (-) 1359 WP_218248278.1 NADP-specific glutamate dehydrogenase -
  LL667_RS07180 (LL667_07180) dprA 1511632..1512741 (-) 1110 WP_218248279.1 DNA-processing protein DprA Machinery gene
  LL667_RS07185 (LL667_07185) - 1512770..1513540 (-) 771 WP_218248280.1 rhomboid family intramembrane serine protease -
  LL667_RS07190 (LL667_07190) - 1513691..1514797 (+) 1107 WP_218248281.1 DUF3078 domain-containing protein -
  LL667_RS07195 (LL667_07195) - 1514818..1516353 (-) 1536 WP_218248282.1 YifB family Mg chelatase-like AAA ATPase -

Sequence

Protein


Download         Length: 369 a.a.        Molecular weight: 41182.24 Da        Isoelectric Point: 6.9004

>NTDB_id=630167 LL667_RS07180 WP_218248279.1 1511632..1512741(-) (dprA) [Kaistella faecalis strain F4]
MFSEETLYSVALRHCPLIGDMVFRKLVSEVGSAKEVWELSKSGLKNIYGIGRKISLEIGNEDHLKFAENELKFCEKNNIQ
INLRHLGNLPHQLNECEDAPAILYQKGCYNTALKPVSMVGTRNITSYGKNFVQDFLNEVKDRKIITISGLALGVDTEIHE
VSIQKNIATVAILAHGFHTLYPSKNRKLSERILEDNGVLFTEFNSSQKPDRENFIQRNRVIAGLSPATIVVETAFGGGSM
STATFANNYNREVFALPGKITDKYSQGCNHLIFQNKAAAISTVSSLVEQLGFSNDIEKTGELFPSSEIKIQLPEFQQTLL
QSLDKNIPLSLDEISVKLQIPSYKILPDLLQLEILGYIKALSGRQYLAI

Nucleotide


Download         Length: 1110 bp        

>NTDB_id=630167 LL667_RS07180 WP_218248279.1 1511632..1512741(-) (dprA) [Kaistella faecalis strain F4]
ATGTTCTCCGAAGAAACTCTCTATTCTGTTGCGCTTCGACACTGCCCGCTGATTGGCGACATGGTCTTCAGAAAACTGGT
GAGCGAAGTAGGCTCTGCAAAGGAAGTTTGGGAATTATCGAAATCCGGGCTCAAAAACATTTACGGCATCGGCAGAAAAA
TTTCCCTGGAAATTGGGAATGAGGATCATTTAAAATTCGCTGAAAATGAACTCAAGTTCTGCGAAAAAAATAACATTCAA
ATCAACCTTCGGCATCTTGGAAACCTTCCCCATCAACTTAATGAATGCGAAGATGCACCAGCAATTCTTTACCAGAAAGG
CTGCTACAACACCGCTCTCAAACCGGTAAGCATGGTGGGAACGCGCAACATCACTTCTTACGGAAAAAACTTTGTGCAGG
ATTTTCTGAATGAAGTGAAGGACAGAAAAATAATCACCATCAGCGGTCTTGCTTTAGGAGTAGATACTGAAATTCATGAA
GTTTCAATCCAGAAAAATATTGCCACCGTTGCCATTTTGGCTCATGGATTCCACACGCTTTATCCAAGTAAGAACAGAAA
ACTTTCGGAAAGAATACTAGAAGACAACGGCGTTCTTTTTACTGAATTCAATTCCAGCCAAAAACCCGACCGCGAAAATT
TTATCCAGAGAAACCGAGTTATCGCAGGTTTATCTCCCGCAACTATCGTGGTGGAAACTGCTTTCGGAGGTGGATCAATG
AGTACAGCGACTTTTGCCAACAATTACAACCGGGAAGTATTCGCACTGCCCGGAAAGATTACAGATAAATACAGCCAGGG
CTGCAATCACCTTATTTTTCAGAATAAGGCAGCAGCGATTTCTACGGTTTCGTCTCTCGTAGAGCAATTGGGGTTTTCTA
ATGATATCGAAAAAACAGGCGAACTGTTTCCGAGTTCAGAAATAAAGATTCAACTTCCTGAATTTCAGCAAACGCTTTTG
CAATCGTTGGATAAAAATATTCCGCTTTCCCTTGATGAAATATCGGTGAAACTTCAGATCCCGTCTTATAAAATATTACC
CGATTTACTTCAGCTTGAAATTTTAGGATACATCAAAGCACTTTCGGGAAGACAATATCTTGCCATTTAG

Domains

Predicted by InterproScan.

DprA winged helix domain (DprA_WH)

(312-363)

DNA recombination-mediator protein A (DNA_processg_A)

(74-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Riemerella anatipestifer ATCC 11845 = DSM 15868

54.67

98.645

0.539