Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   LO541_RS16270 Genome accession   NZ_CP087580
Coordinates   3307277..3307873 (-) Length   198 a.a.
NCBI ID   WP_004201433.1    Uniprot ID   -
Organism   Klebsiella quasipneumoniae strain OSUCMP263AKPC     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3302277..3312873
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LO541_RS16255 (LO541_16255) helD 3302488..3304542 (-) 2055 WP_130946198.1 DNA helicase IV -
  LO541_RS16260 (LO541_16260) - 3304667..3305113 (+) 447 WP_004201437.1 YccF domain-containing protein -
  LO541_RS16265 (LO541_16265) yccS 3305131..3307266 (+) 2136 WP_169319293.1 YccS family putative transporter -
  LO541_RS16270 (LO541_16270) sxy/tfoX 3307277..3307873 (-) 597 WP_004201433.1 TfoX/Sxy family DNA transformation protein Regulator
  LO541_RS16275 (LO541_16275) sulA 3308222..3308731 (+) 510 WP_017899460.1 SOS-induced cell division inhibitor SulA -
  LO541_RS16280 (LO541_16280) ompA 3309084..3310154 (+) 1071 WP_004201430.1 porin OmpA -
  LO541_RS16285 (LO541_16285) matP 3310337..3310789 (-) 453 WP_002898404.1 macrodomain Ter protein MatP -
  LO541_RS16290 (LO541_16290) - 3310975..3312732 (+) 1758 WP_048323579.1 AAA family ATPase -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22566.29 Da        Isoelectric Point: 10.1333

>NTDB_id=630153 LO541_RS16270 WP_004201433.1 3307277..3307873(-) (sxy/tfoX) [Klebsiella quasipneumoniae strain OSUCMP263AKPC]
MKKLVCPRLPQFQACVSPLGQLHSRPLFGGYSLAIEDTVFAMVAEGNIYLKACEQSAAYRVEHHNPLLMLRRHGRIVPLK
YYQIDDALWRDEKQLFRLSLMSWQSAQREKCRRRSSGRLKDLPNISFHMELQLIHSGIPDVLALREVGARQAWLKLRENN
ASLSHNVLLALEGAIVGVHAAALPTPRRQELLEWAAAR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=630153 LO541_RS16270 WP_004201433.1 3307277..3307873(-) (sxy/tfoX) [Klebsiella quasipneumoniae strain OSUCMP263AKPC]
ATGAAAAAACTTGTATGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTTCACTCTCGCCCCCT
GTTTGGCGGCTACAGTCTGGCTATCGAAGATACCGTGTTTGCGATGGTGGCAGAGGGAAATATTTATCTGAAAGCCTGCG
AGCAGAGCGCTGCCTATCGGGTAGAACACCATAATCCTTTATTGATGCTGCGCCGACATGGGCGCATCGTGCCGCTAAAG
TATTATCAAATTGACGATGCCTTGTGGCGCGATGAGAAACAGCTTTTCCGCTTATCGCTGATGTCGTGGCAGAGCGCCCA
GCGTGAAAAATGTCGCCGCCGGTCGTCGGGACGCCTGAAGGATTTACCTAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACTCGGGCATACCAGACGTGTTAGCACTACGGGAGGTGGGCGCCCGCCAGGCCTGGCTAAAGCTGCGTGAGAACAAT
GCTTCCCTATCACACAACGTCTTGCTGGCGCTGGAGGGGGCTATCGTTGGCGTCCATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTGGAATGGGCGGCTGCCCGCTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(16-105)

TfoX C-terminal domain (TfoX_C)

(117-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

50.769

98.485

0.5