Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   LOS76_RS20915 Genome accession   NZ_CP087570
Coordinates   4334361..4334990 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain 114     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 4329361..4339990
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOS76_RS20900 (LOS76_20900) helD 4329603..4331657 (-) 2055 WP_000420536.1 DNA helicase IV -
  LOS76_RS20905 (LOS76_20905) yccF 4331780..4332226 (+) 447 WP_001261235.1 YccF domain-containing protein -
  LOS76_RS20910 (LOS76_20910) yccS 4332236..4334398 (+) 2163 WP_000875023.1 YccS family putative transporter -
  LOS76_RS20915 (LOS76_20915) sxy/tfoX 4334361..4334990 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  LOS76_RS20920 (LOS76_20920) sulA 4335209..4335718 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  LOS76_RS20925 (LOS76_20925) ompA 4336075..4337127 (+) 1053 WP_001361736.1 porin OmpA -
  LOS76_RS20930 (LOS76_20930) matP 4337203..4337655 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  LOS76_RS20935 (LOS76_20935) ycbZ 4337841..4339601 (+) 1761 WP_000156526.1 AAA family ATPase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=630114 LOS76_RS20915 WP_000839153.1 4334361..4334990(-) (sxy/tfoX) [Escherichia coli strain 114]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=630114 LOS76_RS20915 WP_000839153.1 4334361..4334990(-) (sxy/tfoX) [Escherichia coli strain 114]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1