Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   LOF66_RS00455 Genome accession   NZ_CP087564
Coordinates   96163..96792 (+) Length   209 a.a.
NCBI ID   WP_000839131.1    Uniprot ID   -
Organism   Escherichia coli strain CM2010-0578/1     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 91163..101792
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOF66_RS00435 (LOF66_00435) ycbZ 91564..93324 (-) 1761 WP_001614499.1 Lon protease family protein -
  LOF66_RS00440 (LOF66_00440) matP 93510..93962 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  LOF66_RS00445 (LOF66_00445) ompA 94038..95078 (-) 1041 WP_000750416.1 porin OmpA -
  LOF66_RS00450 (LOF66_00450) sulA 95435..95944 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  LOF66_RS00455 (LOF66_00455) sxy/tfoX 96163..96792 (+) 630 WP_000839131.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  LOF66_RS00460 (LOF66_00460) yccS 96755..98917 (-) 2163 WP_000875061.1 YccS family putative transporter -
  LOF66_RS00465 (LOF66_00465) yccF 98927..99373 (-) 447 WP_001261235.1 YccF domain-containing protein -
  LOF66_RS00470 (LOF66_00470) helD 99496..101550 (+) 2055 WP_001295354.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24177.10 Da        Isoelectric Point: 9.2180

>NTDB_id=630057 LOF66_RS00455 WP_000839131.1 96163..96792(+) (sxy/tfoX) [Escherichia coli strain CM2010-0578/1]
MKSLSYKRIYKSQEYLAMLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=630057 LOF66_RS00455 WP_000839131.1 96163..96792(+) (sxy/tfoX) [Escherichia coli strain CM2010-0578/1]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAATGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995