Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   N5O81_RS21830 Genome accession   NZ_CP104503
Coordinates   4493382..4493987 (+) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain E1     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4488382..4498987
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N5O81_RS21800 (N5O81_21800) rsmS 4489087..4489248 (-) 162 WP_000051146.1 pleiotropic regulatory protein RsmS -
  N5O81_RS21805 (N5O81_21805) priC 4489262..4489789 (-) 528 WP_000844854.1 primosomal replication protein N'' -
  N5O81_RS21810 (N5O81_21810) ybaN 4489859..4490236 (+) 378 WP_001188900.1 DUF454 family protein -
  N5O81_RS21815 (N5O81_21815) apt 4490389..4490940 (+) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  N5O81_RS21820 (N5O81_21820) dnaX 4491069..4493000 (+) 1932 WP_000122015.1 DNA polymerase III subunit gamma/tau -
  N5O81_RS21825 (N5O81_21825) ybaB 4493053..4493382 (+) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  N5O81_RS21830 (N5O81_21830) recR 4493382..4493987 (+) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  N5O81_RS21835 (N5O81_21835) htpG 4494097..4495971 (+) 1875 WP_000678201.1 molecular chaperone HtpG -
  N5O81_RS21840 (N5O81_21840) adk 4496152..4496796 (+) 645 WP_001220233.1 adenylate kinase -
  N5O81_RS21845 (N5O81_21845) hemH 4496928..4497890 (+) 963 WP_001250114.1 ferrochelatase -
  N5O81_RS21850 (N5O81_21850) aes 4497865..4498833 (-) 969 WP_000801820.1 acetyl esterase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=630047 N5O81_RS21830 WP_001195025.1 4493382..4493987(+) (recR) [Escherichia coli strain E1]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=630047 N5O81_RS21830 WP_001195025.1 4493382..4493987(+) (recR) [Escherichia coli strain E1]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGTCACTGCGCCGATTGCCGCACCTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCACGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATTTACGCCATTGAGCAGACGGGGCAGTTTTCAGGTCGTTATTTTGT
GTTGATGGGACACCTGTCACCGCTGGACGGCATCGGTCCTGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGTGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443