Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   CAETHG_RS09910 Genome accession   NC_022592
Coordinates   2104648..2106003 (-) Length   451 a.a.
NCBI ID   WP_013240716.1    Uniprot ID   D8GJ66
Organism   Clostridium autoethanogenum DSM 10061     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2099648..2111003
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CAETHG_RS09890 (CAETHG_1969) ispD 2100998..2101690 (-) 693 WP_013240712.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  CAETHG_RS09895 (CAETHG_1970) - 2101694..2102821 (-) 1128 WP_013240713.1 PIN/TRAM domain-containing protein -
  CAETHG_RS09900 (CAETHG_1971) - 2103125..2103529 (+) 405 WP_013240714.1 hypothetical protein -
  CAETHG_RS09905 (CAETHG_1972) disA 2103569..2104633 (-) 1065 WP_013240715.1 DNA integrity scanning diadenylate cyclase DisA -
  CAETHG_RS09910 (CAETHG_1973) radA 2104648..2106003 (-) 1356 WP_013240716.1 DNA repair protein RadA Machinery gene
  CAETHG_RS09915 (CAETHG_1974) - 2106109..2108550 (-) 2442 WP_013240717.1 ATP-dependent Clp protease ATP-binding subunit -
  CAETHG_RS09920 (CAETHG_1975) - 2108571..2109611 (-) 1041 WP_013240718.1 protein arginine kinase -
  CAETHG_RS09925 (CAETHG_1976) - 2109614..2110162 (-) 549 WP_013240719.1 UvrB/UvrC motif-containing protein -
  CAETHG_RS09930 (CAETHG_1977) - 2110236..2110718 (-) 483 WP_013240720.1 CtsR family transcriptional regulator -

Sequence

Protein


Download         Length: 451 a.a.        Molecular weight: 49602.45 Da        Isoelectric Point: 8.3532

>NTDB_id=63000 CAETHG_RS09910 WP_013240716.1 2104648..2106003(-) (radA) [Clostridium autoethanogenum DSM 10061]
MVKKKTVFVCQECGYESPKWLGKCPNCNKWNCMIEEIKSPQEVTFSNMKFSSTPKSINNIKSGEYERLDTGIMELNRVLG
GGIVKGSITLISGAPGIGKSTLLLQTASNIAEKYGKVLYVSGEESEEQIKMRGDRLDSLSNDLYIVSEVNIDKIKAHIEQ
TKPVFVVVDSIQTLFKESISSAPGSVSQVRETSNDIMRIGKSNNISFFIVAHVTKQGELAGPRVLEHMVDTVLSFEGERT
GELRILRTVKNRFGTTSEIGVFEMAGSGLKEILNPSAAFLEDREFQKEGSVIIGIMEGRRPILVEIQALVSETKAVMPRR
TAVGVDISRLNLILAVLEKKLRITFYNCDVYVNVVGGLKIEGTFGDLGLALALISSAKSREIGLDNLLAVGEVGLTSEVR
PVSFCDRIVNEAKKMGFRNIIIPDRNKEKVNSKDINVIGVSSLKEALNKVF

Nucleotide


Download         Length: 1356 bp        

>NTDB_id=63000 CAETHG_RS09910 WP_013240716.1 2104648..2106003(-) (radA) [Clostridium autoethanogenum DSM 10061]
ATGGTAAAGAAAAAAACGGTTTTTGTATGCCAGGAATGTGGATATGAATCCCCAAAGTGGCTTGGTAAATGTCCTAACTG
TAATAAATGGAACTGCATGATAGAAGAGATTAAGTCACCTCAGGAAGTAACATTTTCTAATATGAAATTTAGCAGCACGC
CAAAAAGTATAAATAATATAAAATCTGGTGAATACGAAAGGCTAGATACTGGTATAATGGAATTGAATAGAGTTCTTGGA
GGAGGTATTGTAAAAGGTTCAATAACACTTATATCCGGGGCTCCTGGTATTGGAAAATCAACTCTGCTTTTACAGACAGC
CAGCAATATTGCTGAAAAATATGGGAAAGTGCTGTATGTCTCAGGAGAAGAGTCAGAAGAACAGATAAAGATGAGGGGAG
ATAGACTTGATTCTTTGTCTAATGATCTTTATATAGTTTCAGAAGTTAATATTGATAAAATAAAAGCTCATATAGAACAA
ACTAAACCCGTATTTGTAGTAGTGGATTCTATTCAGACTTTATTTAAAGAATCTATTAGCTCAGCACCGGGTAGTGTGTC
TCAAGTAAGGGAAACTTCTAACGATATTATGCGTATAGGGAAGTCTAATAATATATCTTTTTTTATAGTGGCACATGTTA
CAAAGCAGGGTGAGCTAGCAGGACCTAGGGTACTAGAGCACATGGTGGATACTGTACTGTCTTTTGAAGGAGAAAGAACT
GGAGAGCTAAGAATTTTAAGAACTGTAAAAAATCGTTTTGGTACTACCAGTGAAATTGGTGTATTTGAAATGGCAGGAAG
CGGACTTAAAGAAATATTAAATCCTTCTGCAGCATTTTTAGAAGATAGAGAATTTCAAAAAGAAGGTTCTGTAATTATTG
GTATAATGGAAGGAAGAAGACCTATACTAGTAGAAATACAAGCGTTGGTTAGCGAAACTAAAGCAGTTATGCCAAGAAGA
ACAGCCGTTGGAGTAGATATTTCTAGATTAAATTTAATTTTAGCGGTACTTGAGAAAAAACTTAGAATTACATTTTATAA
TTGTGATGTTTATGTAAATGTAGTGGGGGGACTTAAGATAGAAGGAACTTTCGGAGATTTAGGGCTTGCACTTGCACTTA
TATCTAGTGCTAAATCTAGGGAAATTGGACTAGATAATCTTTTAGCAGTAGGTGAAGTTGGACTTACAAGTGAAGTTAGA
CCAGTATCATTTTGTGATAGAATAGTAAATGAAGCAAAAAAAATGGGATTTAGGAATATAATAATACCAGATAGAAATAA
GGAAAAGGTAAATTCTAAAGATATAAATGTTATAGGTGTATCCTCCCTAAAGGAGGCATTAAATAAAGTTTTTTAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-34)

AAA domain (AAA_25)

(61-217)

Subunit ChlI of Mg-chelatase (ChlI)

(341-426)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB D8GJ66

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

50.773

100

0.51
  radA Streptococcus pneumoniae Rx1

48.578

100

0.492
  radA Streptococcus pneumoniae D39

48.578

100

0.492
  radA Streptococcus pneumoniae R6

48.578

100

0.492
  radA Streptococcus pneumoniae TIGR4

48.578

100

0.492
  radA Streptococcus mitis NCTC 12261

48.359

100

0.49
  radA Streptococcus mitis SK321

48.359

100

0.49

Multiple sequence alignment