Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   LPB08_RS14070 Genome accession   NZ_CP087543
Coordinates   2849428..2850033 (-) Length   201 a.a.
NCBI ID   WP_001202375.1    Uniprot ID   A0A5I0N148
Organism   Salmonella enterica subsp. enterica strain Z01320SL0024     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2844428..2855033
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPB08_RS14055 (LPB08_14030) helD 2844645..2846699 (-) 2055 WP_000420497.1 DNA helicase IV -
  LPB08_RS14060 (LPB08_14035) - 2846823..2847269 (+) 447 WP_001261222.1 YccF domain-containing protein -
  LPB08_RS14065 (LPB08_14040) yccS 2847288..2849441 (+) 2154 WP_000950861.1 YccS family putative transporter -
  LPB08_RS14070 (LPB08_14045) sxy/tfoX 2849428..2850033 (-) 606 WP_001202375.1 TfoX/Sxy family DNA transformation protein Regulator
  LPB08_RS14075 (LPB08_14050) sulA 2850250..2850759 (+) 510 WP_000288732.1 SOS-induced cell division inhibitor SulA -
  LPB08_RS14080 (LPB08_14055) ompA 2851116..2852168 (+) 1053 WP_001670727.1 porin OmpA -
  LPB08_RS14085 (LPB08_14060) matP 2852240..2852692 (-) 453 WP_000877172.1 macrodomain Ter protein MatP -
  LPB08_RS14090 (LPB08_14065) - 2852878..2854638 (+) 1761 WP_000156448.1 Lon protease family protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23174.94 Da        Isoelectric Point: 8.7403

>NTDB_id=629916 LPB08_RS14070 WP_001202375.1 2849428..2850033(-) (sxy/tfoX) [Salmonella enterica subsp. enterica strain Z01320SL0024]
MRALSYDRIYKSQEYLASLGTIQYRSLFGSYSLTVEDTVFAMVANGELYLRACEESVPYCVKHPPAWLMFMKCGRPVMLN
YYRVDESLWRDQQQLVRLSKYSLDAAMKEKHSRILQHRLKDLPNMTFHLETLLNESGIKDENMLRILGAKMCWLRLRQSN
PLLTVKVLYALEGAIVGVHEAALPASRRQELADWAHSLTAG

Nucleotide


Download         Length: 606 bp        

>NTDB_id=629916 LPB08_RS14070 WP_001202375.1 2849428..2850033(-) (sxy/tfoX) [Salmonella enterica subsp. enterica strain Z01320SL0024]
ATGAGAGCACTCTCTTATGACAGGATCTATAAATCGCAAGAATATTTGGCCTCTCTGGGGACGATCCAGTATCGATCTTT
ATTCGGTAGCTATAGTCTGACCGTGGAGGATACCGTCTTTGCGATGGTGGCTAATGGCGAGCTTTATCTCCGCGCCTGTG
AAGAAAGCGTACCCTACTGTGTGAAGCATCCCCCCGCCTGGCTCATGTTTATGAAATGTGGACGTCCCGTTATGCTCAAC
TATTACCGGGTGGATGAAAGCCTGTGGCGCGATCAGCAGCAGCTGGTACGTTTATCGAAGTATTCTCTTGACGCGGCAAT
GAAGGAAAAACACAGCCGTATTTTACAGCACAGACTCAAAGATCTCCCCAATATGACCTTCCATCTGGAAACATTGCTCA
ATGAGTCAGGGATAAAGGACGAAAATATGTTACGCATACTGGGCGCGAAAATGTGCTGGCTAAGGTTGCGACAAAGCAAT
CCCTTGCTGACGGTGAAAGTTTTGTATGCCCTGGAAGGCGCAATTGTCGGCGTACATGAAGCGGCGCTCCCGGCGAGTCG
TCGCCAGGAGCTTGCCGACTGGGCTCATTCGCTTACGGCTGGGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5I0N148

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

75.879

99.005

0.751