Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   LPB24_RS16325 Genome accession   NZ_CP087541
Coordinates   3378966..3379571 (-) Length   201 a.a.
NCBI ID   WP_001202375.1    Uniprot ID   A0A5I0N148
Organism   Salmonella enterica subsp. enterica strain Z01319SL0009     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3373966..3384571
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPB24_RS16310 (LPB24_16305) helD 3374183..3376237 (-) 2055 WP_023241546.1 DNA helicase IV -
  LPB24_RS16315 (LPB24_16310) - 3376361..3376807 (+) 447 WP_001261222.1 YccF domain-containing protein -
  LPB24_RS16320 (LPB24_16315) yccS 3376826..3378979 (+) 2154 WP_023241545.1 YccS family putative transporter -
  LPB24_RS16325 (LPB24_16320) sxy/tfoX 3378966..3379571 (-) 606 WP_001202375.1 TfoX/Sxy family DNA transformation protein Regulator
  LPB24_RS16330 (LPB24_16325) sulA 3379788..3380297 (+) 510 WP_023195822.1 SOS-induced cell division inhibitor SulA -
  LPB24_RS16335 (LPB24_16330) ompA 3380654..3381706 (+) 1053 WP_001670727.1 porin OmpA -
  LPB24_RS16340 (LPB24_16335) matP 3381778..3382230 (-) 453 WP_000877172.1 macrodomain Ter protein MatP -
  LPB24_RS16345 (LPB24_16340) - 3382416..3384176 (+) 1761 WP_023241544.1 Lon protease family protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23174.94 Da        Isoelectric Point: 8.7403

>NTDB_id=629899 LPB24_RS16325 WP_001202375.1 3378966..3379571(-) (sxy/tfoX) [Salmonella enterica subsp. enterica strain Z01319SL0009]
MRALSYDRIYKSQEYLASLGTIQYRSLFGSYSLTVEDTVFAMVANGELYLRACEESVPYCVKHPPAWLMFMKCGRPVMLN
YYRVDESLWRDQQQLVRLSKYSLDAAMKEKHSRILQHRLKDLPNMTFHLETLLNESGIKDENMLRILGAKMCWLRLRQSN
PLLTVKVLYALEGAIVGVHEAALPASRRQELADWAHSLTAG

Nucleotide


Download         Length: 606 bp        

>NTDB_id=629899 LPB24_RS16325 WP_001202375.1 3378966..3379571(-) (sxy/tfoX) [Salmonella enterica subsp. enterica strain Z01319SL0009]
ATGAGAGCACTCTCTTATGACAGGATCTATAAATCGCAAGAATATTTGGCCTCTTTGGGGACGATCCAGTATCGATCTTT
ATTCGGTAGCTATAGTCTGACCGTGGAGGATACCGTCTTTGCGATGGTGGCTAATGGCGAGCTTTATCTCCGCGCCTGTG
AAGAAAGCGTCCCCTACTGTGTGAAGCATCCTCCCGCCTGGCTCATGTTTATGAAATGTGGACGTCCCGTTATGCTCAAC
TATTACCGGGTGGATGAAAGCCTGTGGCGCGATCAGCAGCAGCTGGTGCGTTTATCGAAGTATTCTCTTGACGCGGCAAT
GAAGGAAAAACACAGCCGTATTTTACAGCACAGACTCAAAGATCTCCCCAATATGACCTTCCATCTGGAAACATTGCTCA
ATGAGTCAGGGATAAAGGACGAAAATATGTTACGCATACTGGGCGCGAAAATGTGCTGGCTAAGGTTGCGACAAAGCAAT
CCCTTGCTGACGGTGAAAGTTTTGTATGCCCTGGAAGGCGCAATTGTCGGCGTACATGAAGCGGCGCTCCCGGCGAGTCG
TCGCCAGGAGCTTGCCGACTGGGCTCACTCGCTTACGGCTGGGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5I0N148

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

75.879

99.005

0.751